Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS01285 and RALBFv3_RS01290 are separated by 143 nucleotides RALBFv3_RS01290 and RALBFv3_RS01295 are separated by 76 nucleotides
RALBFv3_RS01285: RALBFv3_RS01285 - phosphoribosylformylglycinamidine synthase, at 286,270 to 290,388
_RS01285
RALBFv3_RS01290: RALBFv3_RS01290 - transcriptional regulator, at 290,532 to 291,098
_RS01290
RALBFv3_RS01295: RALBFv3_RS01295 - bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase, at 291,175 to 292,770
_RS01295
Position (kb) 290
291
292 Strain fitness (log2 ratio) -1
0
1
2
3 at 290.448 kb on - strand at 290.448 kb on - strand at 290.566 kb on + strand at 290.712 kb on - strand, within RALBFv3_RS01290 at 290.712 kb on - strand, within RALBFv3_RS01290 at 290.713 kb on + strand, within RALBFv3_RS01290 at 290.779 kb on + strand, within RALBFv3_RS01290 at 290.780 kb on - strand, within RALBFv3_RS01290 at 290.938 kb on + strand, within RALBFv3_RS01290 at 290.938 kb on + strand, within RALBFv3_RS01290 at 291.137 kb on - strand at 291.137 kb on - strand at 291.142 kb on - strand at 291.142 kb on - strand at 291.142 kb on - strand at 291.149 kb on + strand at 291.174 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 290,448 - -0.3 290,448 - +0.2 290,566 + +0.8 290,712 - RALBFv3_RS01290 0.32 +0.4 290,712 - RALBFv3_RS01290 0.32 -0.6 290,713 + RALBFv3_RS01290 0.32 -0.3 290,779 + RALBFv3_RS01290 0.44 +3.6 290,780 - RALBFv3_RS01290 0.44 +0.3 290,938 + RALBFv3_RS01290 0.72 -0.0 290,938 + RALBFv3_RS01290 0.72 +0.4 291,137 - -0.2 291,137 - -0.1 291,142 - +0.3 291,142 - +1.0 291,142 - -0.3 291,149 + -0.6 291,174 + -1.7
Or see this region's nucleotide sequence