Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS00940 and RALBFv3_RS00945 are separated by 2 nucleotides RALBFv3_RS00945 and RALBFv3_RS00950 overlap by 8 nucleotides RALBFv3_RS00950 and RALBFv3_RS00955 are separated by 158 nucleotides
RALBFv3_RS00940: RALBFv3_RS00940 - 2-oxo acid dehydrogenase subunit E2, at 208,805 to 209,929
_RS00940
RALBFv3_RS00945: RALBFv3_RS00945 - alpha-ketoacid dehydrogenase subunit beta, at 209,932 to 210,912
_RS00945
RALBFv3_RS00950: RALBFv3_RS00950 - pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha, at 210,905 to 212,011
_RS00950
RALBFv3_RS00955: RALBFv3_RS00955 - glutathione S-transferase, at 212,170 to 212,829
_RS00955
Position (kb) 210
211
212
213 Strain fitness (log2 ratio) -2
-1
0
1
2 at 209.990 kb on + strand at 209.991 kb on - strand at 209.991 kb on - strand at 210.065 kb on + strand, within RALBFv3_RS00945 at 210.065 kb on + strand, within RALBFv3_RS00945 at 210.384 kb on - strand, within RALBFv3_RS00945 at 210.650 kb on + strand, within RALBFv3_RS00945 at 210.651 kb on - strand, within RALBFv3_RS00945 at 210.747 kb on + strand, within RALBFv3_RS00945 at 211.005 kb on + strand at 211.006 kb on - strand at 211.006 kb on - strand at 211.500 kb on + strand, within RALBFv3_RS00950 at 211.579 kb on - strand, within RALBFv3_RS00950 at 212.331 kb on - strand, within RALBFv3_RS00955 at 212.331 kb on - strand, within RALBFv3_RS00955 at 212.604 kb on - strand, within RALBFv3_RS00955 at 212.787 kb on - strand at 212.829 kb on + strand at 212.995 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 209,990 + -0.6 209,991 - -0.8 209,991 - -0.2 210,065 + RALBFv3_RS00945 0.14 +0.3 210,065 + RALBFv3_RS00945 0.14 -0.9 210,384 - RALBFv3_RS00945 0.46 +0.2 210,650 + RALBFv3_RS00945 0.73 +0.1 210,651 - RALBFv3_RS00945 0.73 -0.9 210,747 + RALBFv3_RS00945 0.83 -0.1 211,005 + -0.1 211,006 - +0.1 211,006 - +0.1 211,500 + RALBFv3_RS00950 0.54 -1.8 211,579 - RALBFv3_RS00950 0.61 -0.3 212,331 - RALBFv3_RS00955 0.24 -0.2 212,331 - RALBFv3_RS00955 0.24 -1.7 212,604 - RALBFv3_RS00955 0.66 +1.2 212,787 - +1.8 212,829 + -0.6 212,995 - -0.2
Or see this region's nucleotide sequence