Experiment: Cisplatin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_50 and Pf6N2E2_51 are separated by 15 nucleotides Pf6N2E2_51 and Pf6N2E2_52 are separated by 121 nucleotides Pf6N2E2_52 and Pf6N2E2_53 are separated by 224 nucleotides
Pf6N2E2_50 - Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57), at 88,788 to 89,984
_50
Pf6N2E2_51 - hypothetical protein, at 90,000 to 90,194
_51
Pf6N2E2_52 - Excinuclease ABC subunit B, at 90,316 to 92,331
_52
Pf6N2E2_53 - Glutamyl-tRNA synthetase (EC 6.1.1.17) @ Glutamyl-tRNA(Gln) synthetase (EC 6.1.1.24), at 92,556 to 94,037
_53
Position (kb)
90
91
92
93 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3 at 89.530 kb on + strand, within Pf6N2E2_50 at 89.531 kb on - strand, within Pf6N2E2_50 at 89.758 kb on + strand, within Pf6N2E2_50 at 89.759 kb on - strand, within Pf6N2E2_50 at 89.786 kb on - strand, within Pf6N2E2_50 at 89.786 kb on - strand, within Pf6N2E2_50 at 89.786 kb on - strand, within Pf6N2E2_50 at 89.786 kb on - strand, within Pf6N2E2_50 at 89.852 kb on + strand, within Pf6N2E2_50 at 89.852 kb on + strand, within Pf6N2E2_50 at 89.853 kb on - strand, within Pf6N2E2_50 at 89.853 kb on - strand, within Pf6N2E2_50 at 89.872 kb on + strand at 89.872 kb on + strand at 89.873 kb on - strand at 89.903 kb on + strand at 89.985 kb on + strand at 89.986 kb on - strand at 89.998 kb on + strand at 89.999 kb on - strand at 90.065 kb on + strand, within Pf6N2E2_51 at 90.065 kb on + strand, within Pf6N2E2_51 at 90.065 kb on + strand, within Pf6N2E2_51 at 90.065 kb on + strand, within Pf6N2E2_51 at 90.065 kb on + strand, within Pf6N2E2_51 at 90.065 kb on + strand, within Pf6N2E2_51 at 90.066 kb on - strand, within Pf6N2E2_51 at 90.066 kb on - strand, within Pf6N2E2_51 at 90.066 kb on - strand, within Pf6N2E2_51 at 90.066 kb on - strand, within Pf6N2E2_51 at 90.066 kb on - strand, within Pf6N2E2_51 at 90.066 kb on - strand, within Pf6N2E2_51 at 90.066 kb on - strand, within Pf6N2E2_51 at 90.066 kb on - strand, within Pf6N2E2_51 at 90.066 kb on - strand, within Pf6N2E2_51 at 90.066 kb on - strand, within Pf6N2E2_51 at 90.068 kb on + strand, within Pf6N2E2_51 at 90.068 kb on + strand, within Pf6N2E2_51 at 90.068 kb on + strand, within Pf6N2E2_51 at 90.068 kb on + strand, within Pf6N2E2_51 at 90.069 kb on - strand, within Pf6N2E2_51 at 90.069 kb on - strand, within Pf6N2E2_51 at 90.070 kb on + strand, within Pf6N2E2_51 at 90.070 kb on + strand, within Pf6N2E2_51 at 90.070 kb on + strand, within Pf6N2E2_51 at 90.070 kb on + strand, within Pf6N2E2_51 at 90.071 kb on - strand, within Pf6N2E2_51 at 90.178 kb on + strand at 90.178 kb on + strand at 90.310 kb on + strand at 90.310 kb on + strand at 90.310 kb on + strand at 90.311 kb on - strand at 90.332 kb on + strand at 90.332 kb on + strand at 90.333 kb on - strand at 90.532 kb on + strand, within Pf6N2E2_52 at 90.532 kb on + strand, within Pf6N2E2_52 at 90.574 kb on + strand, within Pf6N2E2_52 at 90.574 kb on + strand, within Pf6N2E2_52 at 90.575 kb on - strand, within Pf6N2E2_52 at 90.586 kb on + strand, within Pf6N2E2_52 at 90.587 kb on - strand, within Pf6N2E2_52 at 90.595 kb on + strand, within Pf6N2E2_52 at 90.595 kb on + strand, within Pf6N2E2_52 at 90.598 kb on + strand, within Pf6N2E2_52 at 90.599 kb on - strand, within Pf6N2E2_52 at 90.599 kb on - strand, within Pf6N2E2_52 at 90.599 kb on - strand, within Pf6N2E2_52 at 90.613 kb on + strand, within Pf6N2E2_52 at 90.614 kb on - strand, within Pf6N2E2_52 at 90.614 kb on - strand, within Pf6N2E2_52 at 90.748 kb on + strand, within Pf6N2E2_52 at 90.748 kb on + strand, within Pf6N2E2_52 at 90.749 kb on - strand, within Pf6N2E2_52 at 90.772 kb on + strand, within Pf6N2E2_52 at 90.773 kb on - strand, within Pf6N2E2_52 at 90.773 kb on - strand, within Pf6N2E2_52 at 90.773 kb on - strand, within Pf6N2E2_52 at 90.853 kb on + strand, within Pf6N2E2_52 at 90.853 kb on + strand, within Pf6N2E2_52 at 90.853 kb on + strand, within Pf6N2E2_52 at 90.854 kb on - strand, within Pf6N2E2_52 at 90.854 kb on - strand, within Pf6N2E2_52 at 91.043 kb on - strand, within Pf6N2E2_52 at 91.057 kb on + strand, within Pf6N2E2_52 at 91.058 kb on - strand, within Pf6N2E2_52 at 91.058 kb on - strand, within Pf6N2E2_52 at 91.129 kb on + strand, within Pf6N2E2_52 at 91.130 kb on - strand, within Pf6N2E2_52 at 91.217 kb on - strand, within Pf6N2E2_52 at 91.237 kb on + strand, within Pf6N2E2_52 at 91.288 kb on + strand, within Pf6N2E2_52 at 91.288 kb on + strand, within Pf6N2E2_52 at 91.288 kb on + strand, within Pf6N2E2_52 at 91.288 kb on + strand, within Pf6N2E2_52 at 91.288 kb on + strand, within Pf6N2E2_52 at 91.288 kb on + strand, within Pf6N2E2_52 at 91.288 kb on + strand, within Pf6N2E2_52 at 91.288 kb on + strand, within Pf6N2E2_52 at 91.288 kb on + strand, within Pf6N2E2_52 at 91.288 kb on + strand, within Pf6N2E2_52 at 91.288 kb on + strand, within Pf6N2E2_52 at 91.288 kb on + strand, within Pf6N2E2_52 at 91.288 kb on + strand, within Pf6N2E2_52 at 91.288 kb on + strand, within Pf6N2E2_52 at 91.288 kb on + strand, within Pf6N2E2_52 at 91.288 kb on + strand, within Pf6N2E2_52 at 91.288 kb on + strand, within Pf6N2E2_52 at 91.288 kb on + strand, within Pf6N2E2_52 at 91.289 kb on - strand, within Pf6N2E2_52 at 91.289 kb on - strand, within Pf6N2E2_52 at 91.289 kb on - strand, within Pf6N2E2_52 at 91.289 kb on - strand, within Pf6N2E2_52 at 91.289 kb on - strand, within Pf6N2E2_52 at 91.289 kb on - strand, within Pf6N2E2_52 at 91.289 kb on - strand, within Pf6N2E2_52 at 91.295 kb on - strand, within Pf6N2E2_52 at 91.363 kb on + strand, within Pf6N2E2_52 at 91.363 kb on + strand, within Pf6N2E2_52 at 91.363 kb on + strand, within Pf6N2E2_52 at 91.364 kb on - strand, within Pf6N2E2_52 at 91.364 kb on - strand, within Pf6N2E2_52 at 91.364 kb on - strand, within Pf6N2E2_52 at 91.507 kb on + strand, within Pf6N2E2_52 at 91.507 kb on + strand, within Pf6N2E2_52 at 91.507 kb on + strand, within Pf6N2E2_52 at 91.508 kb on - strand, within Pf6N2E2_52 at 91.508 kb on - strand, within Pf6N2E2_52 at 91.508 kb on - strand, within Pf6N2E2_52 at 91.733 kb on - strand, within Pf6N2E2_52 at 92.177 kb on - strand at 92.243 kb on - strand at 92.536 kb on + strand at 92.536 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.008 mg/ml remove 89,530 + Pf6N2E2_50 0.62 +1.6 89,531 - Pf6N2E2_50 0.62 +0.1 89,758 + Pf6N2E2_50 0.81 +1.3 89,759 - Pf6N2E2_50 0.81 -0.5 89,786 - Pf6N2E2_50 0.83 +0.6 89,786 - Pf6N2E2_50 0.83 +0.4 89,786 - Pf6N2E2_50 0.83 -0.4 89,786 - Pf6N2E2_50 0.83 +0.7 89,852 + Pf6N2E2_50 0.89 +0.4 89,852 + Pf6N2E2_50 0.89 +0.9 89,853 - Pf6N2E2_50 0.89 +0.6 89,853 - Pf6N2E2_50 0.89 +1.5 89,872 + +0.9 89,872 + +2.3 89,873 - -0.2 89,903 + +0.7 89,985 + +1.5 89,986 - -0.9 89,998 + +2.4 89,999 - -0.3 90,065 + Pf6N2E2_51 0.33 +2.4 90,065 + Pf6N2E2_51 0.33 +0.9 90,065 + Pf6N2E2_51 0.33 +2.5 90,065 + Pf6N2E2_51 0.33 +2.2 90,065 + Pf6N2E2_51 0.33 +2.0 90,065 + Pf6N2E2_51 0.33 +1.9 90,066 - Pf6N2E2_51 0.34 -0.2 90,066 - Pf6N2E2_51 0.34 +0.7 90,066 - Pf6N2E2_51 0.34 -0.8 90,066 - Pf6N2E2_51 0.34 -0.6 90,066 - Pf6N2E2_51 0.34 +0.1 90,066 - Pf6N2E2_51 0.34 +0.3 90,066 - Pf6N2E2_51 0.34 -2.0 90,066 - Pf6N2E2_51 0.34 -0.7 90,066 - Pf6N2E2_51 0.34 -1.8 90,066 - Pf6N2E2_51 0.34 -0.4 90,068 + Pf6N2E2_51 0.35 +3.1 90,068 + Pf6N2E2_51 0.35 +1.0 90,068 + Pf6N2E2_51 0.35 +1.5 90,068 + Pf6N2E2_51 0.35 +1.8 90,069 - Pf6N2E2_51 0.35 -0.0 90,069 - Pf6N2E2_51 0.35 +0.7 90,070 + Pf6N2E2_51 0.36 +2.3 90,070 + Pf6N2E2_51 0.36 +0.5 90,070 + Pf6N2E2_51 0.36 +0.7 90,070 + Pf6N2E2_51 0.36 +1.9 90,071 - Pf6N2E2_51 0.36 -0.1 90,178 + +2.4 90,178 + +2.6 90,310 + -1.8 90,310 + -1.3 90,310 + -0.3 90,311 - -2.0 90,332 + -3.0 90,332 + -4.6 90,333 - -4.6 90,532 + Pf6N2E2_52 0.11 -4.9 90,532 + Pf6N2E2_52 0.11 -2.7 90,574 + Pf6N2E2_52 0.13 -3.6 90,574 + Pf6N2E2_52 0.13 -4.5 90,575 - Pf6N2E2_52 0.13 -3.1 90,586 + Pf6N2E2_52 0.13 -3.5 90,587 - Pf6N2E2_52 0.13 -4.1 90,595 + Pf6N2E2_52 0.14 -4.8 90,595 + Pf6N2E2_52 0.14 -4.5 90,598 + Pf6N2E2_52 0.14 -3.4 90,599 - Pf6N2E2_52 0.14 -0.5 90,599 - Pf6N2E2_52 0.14 -4.3 90,599 - Pf6N2E2_52 0.14 -4.0 90,613 + Pf6N2E2_52 0.15 -4.6 90,614 - Pf6N2E2_52 0.15 -4.6 90,614 - Pf6N2E2_52 0.15 -0.6 90,748 + Pf6N2E2_52 0.21 -4.5 90,748 + Pf6N2E2_52 0.21 -2.7 90,749 - Pf6N2E2_52 0.21 -4.5 90,772 + Pf6N2E2_52 0.23 -3.9 90,773 - Pf6N2E2_52 0.23 -4.6 90,773 - Pf6N2E2_52 0.23 -5.4 90,773 - Pf6N2E2_52 0.23 -4.3 90,853 + Pf6N2E2_52 0.27 -3.0 90,853 + Pf6N2E2_52 0.27 -4.9 90,853 + Pf6N2E2_52 0.27 -3.1 90,854 - Pf6N2E2_52 0.27 -2.9 90,854 - Pf6N2E2_52 0.27 -4.1 91,043 - Pf6N2E2_52 0.36 -3.0 91,057 + Pf6N2E2_52 0.37 -4.0 91,058 - Pf6N2E2_52 0.37 -4.7 91,058 - Pf6N2E2_52 0.37 -3.4 91,129 + Pf6N2E2_52 0.40 -3.6 91,130 - Pf6N2E2_52 0.40 -4.2 91,217 - Pf6N2E2_52 0.45 -2.0 91,237 + Pf6N2E2_52 0.46 -4.1 91,288 + Pf6N2E2_52 0.48 -3.2 91,288 + Pf6N2E2_52 0.48 -2.9 91,288 + Pf6N2E2_52 0.48 -3.2 91,288 + Pf6N2E2_52 0.48 -4.3 91,288 + Pf6N2E2_52 0.48 -4.1 91,288 + Pf6N2E2_52 0.48 -3.0 91,288 + Pf6N2E2_52 0.48 -4.0 91,288 + Pf6N2E2_52 0.48 -4.0 91,288 + Pf6N2E2_52 0.48 -1.5 91,288 + Pf6N2E2_52 0.48 -4.3 91,288 + Pf6N2E2_52 0.48 -3.9 91,288 + Pf6N2E2_52 0.48 -2.6 91,288 + Pf6N2E2_52 0.48 -3.5 91,288 + Pf6N2E2_52 0.48 -4.2 91,288 + Pf6N2E2_52 0.48 -1.6 91,288 + Pf6N2E2_52 0.48 -4.2 91,288 + Pf6N2E2_52 0.48 -3.9 91,288 + Pf6N2E2_52 0.48 -3.7 91,289 - Pf6N2E2_52 0.48 -3.9 91,289 - Pf6N2E2_52 0.48 -2.4 91,289 - Pf6N2E2_52 0.48 -5.1 91,289 - Pf6N2E2_52 0.48 -2.9 91,289 - Pf6N2E2_52 0.48 -2.3 91,289 - Pf6N2E2_52 0.48 -4.0 91,289 - Pf6N2E2_52 0.48 -3.7 91,295 - Pf6N2E2_52 0.49 -4.2 91,363 + Pf6N2E2_52 0.52 -4.6 91,363 + Pf6N2E2_52 0.52 -4.6 91,363 + Pf6N2E2_52 0.52 -1.8 91,364 - Pf6N2E2_52 0.52 -1.6 91,364 - Pf6N2E2_52 0.52 -3.6 91,364 - Pf6N2E2_52 0.52 -2.8 91,507 + Pf6N2E2_52 0.59 -3.4 91,507 + Pf6N2E2_52 0.59 -4.5 91,507 + Pf6N2E2_52 0.59 -3.6 91,508 - Pf6N2E2_52 0.59 -1.0 91,508 - Pf6N2E2_52 0.59 -5.0 91,508 - Pf6N2E2_52 0.59 -2.3 91,733 - Pf6N2E2_52 0.70 -3.3 92,177 - -3.8 92,243 - -4.0 92,536 + +0.2 92,536 + +0.7
Or see this region's nucleotide sequence