Experiment: Cisplatin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3027 and Pf6N2E2_3028 are separated by 3 nucleotides Pf6N2E2_3028 and Pf6N2E2_3029 are separated by 36 nucleotides Pf6N2E2_3029 and Pf6N2E2_3030 are separated by 119 nucleotides
Pf6N2E2_3027 - Baseplate assembly protein V, at 3,512,580 to 3,513,191
_3027
Pf6N2E2_3028 - FIG00959937: hypothetical protein, at 3,513,195 to 3,513,707
_3028
Pf6N2E2_3029 - Holin, at 3,513,744 to 3,514,094
_3029
Pf6N2E2_3030 - hypothetical protein, at 3,514,214 to 3,514,642
_3030
Position (kb)
3513
3514
3515 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3513.214 kb on + strand at 3513.214 kb on + strand at 3513.214 kb on + strand at 3513.240 kb on + strand at 3513.252 kb on - strand, within Pf6N2E2_3028 at 3513.305 kb on - strand, within Pf6N2E2_3028 at 3513.340 kb on + strand, within Pf6N2E2_3028 at 3513.341 kb on - strand, within Pf6N2E2_3028 at 3513.341 kb on - strand, within Pf6N2E2_3028 at 3513.341 kb on - strand, within Pf6N2E2_3028 at 3513.341 kb on - strand, within Pf6N2E2_3028 at 3513.640 kb on + strand, within Pf6N2E2_3028 at 3513.641 kb on - strand, within Pf6N2E2_3028 at 3513.724 kb on + strand at 3513.724 kb on + strand at 3513.725 kb on - strand at 3513.901 kb on + strand, within Pf6N2E2_3029 at 3513.901 kb on + strand, within Pf6N2E2_3029 at 3513.901 kb on + strand, within Pf6N2E2_3029 at 3513.901 kb on + strand, within Pf6N2E2_3029 at 3513.901 kb on + strand, within Pf6N2E2_3029 at 3513.901 kb on + strand, within Pf6N2E2_3029 at 3513.901 kb on + strand, within Pf6N2E2_3029 at 3513.902 kb on - strand, within Pf6N2E2_3029 at 3513.902 kb on - strand, within Pf6N2E2_3029 at 3514.116 kb on + strand at 3514.117 kb on - strand at 3514.136 kb on - strand at 3514.163 kb on - strand at 3514.192 kb on - strand at 3514.192 kb on - strand at 3514.215 kb on + strand at 3514.215 kb on + strand at 3514.216 kb on - strand at 3514.216 kb on - strand at 3514.216 kb on - strand at 3514.216 kb on - strand at 3514.245 kb on + strand at 3514.245 kb on + strand at 3514.245 kb on + strand at 3514.245 kb on + strand at 3514.245 kb on + strand at 3514.246 kb on - strand at 3514.257 kb on + strand, within Pf6N2E2_3030 at 3514.258 kb on - strand, within Pf6N2E2_3030 at 3514.258 kb on - strand, within Pf6N2E2_3030 at 3514.258 kb on - strand, within Pf6N2E2_3030 at 3514.263 kb on + strand, within Pf6N2E2_3030 at 3514.264 kb on - strand, within Pf6N2E2_3030 at 3514.264 kb on - strand, within Pf6N2E2_3030 at 3514.264 kb on - strand, within Pf6N2E2_3030 at 3514.264 kb on - strand, within Pf6N2E2_3030 at 3514.264 kb on - strand, within Pf6N2E2_3030 at 3514.315 kb on - strand, within Pf6N2E2_3030 at 3514.343 kb on + strand, within Pf6N2E2_3030 at 3514.343 kb on + strand, within Pf6N2E2_3030 at 3514.343 kb on + strand, within Pf6N2E2_3030 at 3514.348 kb on + strand, within Pf6N2E2_3030 at 3514.349 kb on - strand, within Pf6N2E2_3030 at 3514.349 kb on - strand, within Pf6N2E2_3030 at 3514.481 kb on - strand, within Pf6N2E2_3030 at 3514.481 kb on - strand, within Pf6N2E2_3030 at 3514.539 kb on + strand, within Pf6N2E2_3030 at 3514.539 kb on + strand, within Pf6N2E2_3030 at 3514.539 kb on + strand, within Pf6N2E2_3030 at 3514.539 kb on + strand, within Pf6N2E2_3030 at 3514.539 kb on + strand, within Pf6N2E2_3030 at 3514.540 kb on - strand, within Pf6N2E2_3030 at 3514.644 kb on - strand at 3514.659 kb on - strand at 3514.713 kb on + strand at 3514.714 kb on - strand at 3514.746 kb on + strand at 3514.746 kb on + strand at 3514.746 kb on + strand at 3514.747 kb on - strand at 3514.749 kb on + strand at 3514.749 kb on + strand at 3514.749 kb on + strand at 3514.749 kb on + strand at 3514.750 kb on - strand at 3514.750 kb on - strand at 3514.750 kb on - strand at 3514.892 kb on + strand at 3514.910 kb on + strand at 3514.984 kb on + strand at 3514.985 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.008 mg/ml remove 3,513,214 + +1.1 3,513,214 + +0.7 3,513,214 + +1.9 3,513,240 + +0.6 3,513,252 - Pf6N2E2_3028 0.11 +1.3 3,513,305 - Pf6N2E2_3028 0.21 +0.7 3,513,340 + Pf6N2E2_3028 0.28 +1.0 3,513,341 - Pf6N2E2_3028 0.28 +1.0 3,513,341 - Pf6N2E2_3028 0.28 +0.7 3,513,341 - Pf6N2E2_3028 0.28 -0.2 3,513,341 - Pf6N2E2_3028 0.28 +1.4 3,513,640 + Pf6N2E2_3028 0.87 +1.2 3,513,641 - Pf6N2E2_3028 0.87 -1.1 3,513,724 + +1.4 3,513,724 + +1.6 3,513,725 - +0.9 3,513,901 + Pf6N2E2_3029 0.45 +2.0 3,513,901 + Pf6N2E2_3029 0.45 +1.8 3,513,901 + Pf6N2E2_3029 0.45 +1.7 3,513,901 + Pf6N2E2_3029 0.45 +2.8 3,513,901 + Pf6N2E2_3029 0.45 +2.1 3,513,901 + Pf6N2E2_3029 0.45 +2.0 3,513,901 + Pf6N2E2_3029 0.45 +2.4 3,513,902 - Pf6N2E2_3029 0.45 +1.6 3,513,902 - Pf6N2E2_3029 0.45 +0.8 3,514,116 + +0.9 3,514,117 - +1.0 3,514,136 - +1.8 3,514,163 - +1.8 3,514,192 - +0.7 3,514,192 - -0.7 3,514,215 + +1.4 3,514,215 + +1.3 3,514,216 - +0.2 3,514,216 - +1.9 3,514,216 - +0.4 3,514,216 - +1.1 3,514,245 + +2.2 3,514,245 + +0.4 3,514,245 + +1.3 3,514,245 + +0.9 3,514,245 + +1.6 3,514,246 - +0.3 3,514,257 + Pf6N2E2_3030 0.10 +1.0 3,514,258 - Pf6N2E2_3030 0.10 +0.9 3,514,258 - Pf6N2E2_3030 0.10 +1.4 3,514,258 - Pf6N2E2_3030 0.10 +3.0 3,514,263 + Pf6N2E2_3030 0.11 +2.0 3,514,264 - Pf6N2E2_3030 0.12 +0.9 3,514,264 - Pf6N2E2_3030 0.12 +1.0 3,514,264 - Pf6N2E2_3030 0.12 +1.5 3,514,264 - Pf6N2E2_3030 0.12 +0.5 3,514,264 - Pf6N2E2_3030 0.12 +0.9 3,514,315 - Pf6N2E2_3030 0.24 +1.2 3,514,343 + Pf6N2E2_3030 0.30 +1.2 3,514,343 + Pf6N2E2_3030 0.30 +1.6 3,514,343 + Pf6N2E2_3030 0.30 +1.1 3,514,348 + Pf6N2E2_3030 0.31 +1.3 3,514,349 - Pf6N2E2_3030 0.31 -0.5 3,514,349 - Pf6N2E2_3030 0.31 +0.7 3,514,481 - Pf6N2E2_3030 0.62 +1.8 3,514,481 - Pf6N2E2_3030 0.62 +0.8 3,514,539 + Pf6N2E2_3030 0.76 +0.5 3,514,539 + Pf6N2E2_3030 0.76 +1.2 3,514,539 + Pf6N2E2_3030 0.76 +1.1 3,514,539 + Pf6N2E2_3030 0.76 +1.5 3,514,539 + Pf6N2E2_3030 0.76 +2.0 3,514,540 - Pf6N2E2_3030 0.76 +2.2 3,514,644 - +1.7 3,514,659 - +0.8 3,514,713 + +1.6 3,514,714 - +0.5 3,514,746 + +0.9 3,514,746 + +1.6 3,514,746 + +0.9 3,514,747 - +0.3 3,514,749 + +1.4 3,514,749 + +0.7 3,514,749 + -0.7 3,514,749 + +0.3 3,514,750 - -0.4 3,514,750 - -0.9 3,514,750 - -0.6 3,514,892 + +2.0 3,514,910 + +3.5 3,514,984 + +2.5 3,514,985 - +2.5
Or see this region's nucleotide sequence