Experiment: sodium fluoride 12.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5954 and Pf1N1B4_5955 are separated by 411 nucleotides Pf1N1B4_5955 and Pf1N1B4_5956 are separated by 9 nucleotides
Pf1N1B4_5954 - hypothetical protein, at 402,482 to 403,000
_5954
Pf1N1B4_5955 - Permease of the major facilitator superfamily, at 403,412 to 404,641
_5955
Pf1N1B4_5956 - NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12), at 404,651 to 405,703
_5956
Position (kb) 403
404
405 Strain fitness (log2 ratio) -2
-1
0
1 at 402.483 kb on + strand at 402.483 kb on + strand at 402.484 kb on - strand at 402.496 kb on - strand at 402.623 kb on + strand, within Pf1N1B4_5954 at 402.705 kb on - strand, within Pf1N1B4_5954 at 402.722 kb on + strand, within Pf1N1B4_5954 at 402.722 kb on + strand, within Pf1N1B4_5954 at 402.722 kb on + strand at 402.722 kb on + strand, within Pf1N1B4_5954 at 402.723 kb on - strand, within Pf1N1B4_5954 at 402.774 kb on + strand, within Pf1N1B4_5954 at 402.925 kb on - strand, within Pf1N1B4_5954 at 402.970 kb on - strand at 403.003 kb on - strand at 403.578 kb on + strand, within Pf1N1B4_5955 at 403.578 kb on + strand, within Pf1N1B4_5955 at 403.578 kb on + strand, within Pf1N1B4_5955 at 403.920 kb on + strand, within Pf1N1B4_5955 at 403.920 kb on + strand, within Pf1N1B4_5955 at 404.220 kb on + strand, within Pf1N1B4_5955 at 404.220 kb on + strand, within Pf1N1B4_5955 at 404.221 kb on - strand, within Pf1N1B4_5955 at 404.475 kb on + strand at 404.476 kb on - strand, within Pf1N1B4_5955 at 404.476 kb on - strand, within Pf1N1B4_5955 at 404.476 kb on - strand at 404.476 kb on - strand, within Pf1N1B4_5955 at 404.581 kb on - strand at 404.581 kb on - strand at 404.602 kb on - strand at 404.727 kb on + strand at 404.727 kb on + strand at 404.727 kb on + strand at 404.728 kb on - strand at 404.728 kb on - strand at 404.728 kb on - strand at 404.728 kb on - strand at 405.334 kb on - strand, within Pf1N1B4_5956
Per-strain Table
Position Strand Gene LocusTag Fraction sodium fluoride 12.5 mM remove 402,483 + +0.7 402,483 + -0.0 402,484 - -1.6 402,496 - -0.5 402,623 + Pf1N1B4_5954 0.27 +0.2 402,705 - Pf1N1B4_5954 0.43 -0.0 402,722 + Pf1N1B4_5954 0.46 -0.3 402,722 + Pf1N1B4_5954 0.46 -0.6 402,722 + -0.6 402,722 + Pf1N1B4_5954 0.46 +0.2 402,723 - Pf1N1B4_5954 0.46 -0.5 402,774 + Pf1N1B4_5954 0.56 -2.1 402,925 - Pf1N1B4_5954 0.85 +0.4 402,970 - +1.4 403,003 - -0.6 403,578 + Pf1N1B4_5955 0.13 -0.0 403,578 + Pf1N1B4_5955 0.13 -0.5 403,578 + Pf1N1B4_5955 0.13 +0.5 403,920 + Pf1N1B4_5955 0.41 -0.7 403,920 + Pf1N1B4_5955 0.41 -0.6 404,220 + Pf1N1B4_5955 0.66 -1.4 404,220 + Pf1N1B4_5955 0.66 +0.4 404,221 - Pf1N1B4_5955 0.66 -1.0 404,475 + -0.0 404,476 - Pf1N1B4_5955 0.87 -0.4 404,476 - Pf1N1B4_5955 0.87 -1.5 404,476 - +1.0 404,476 - Pf1N1B4_5955 0.87 -0.4 404,581 - +0.6 404,581 - +1.1 404,602 - -0.6 404,727 + -0.0 404,727 + +1.0 404,727 + +0.1 404,728 - +0.4 404,728 - -0.2 404,728 - +1.0 404,728 - -0.9 405,334 - Pf1N1B4_5956 0.65 -2.5
Or see this region's nucleotide sequence