Experiment: sodium fluoride 12.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5772 and Pf1N1B4_5773 are separated by 70 nucleotides Pf1N1B4_5773 and Pf1N1B4_5774 overlap by 4 nucleotides Pf1N1B4_5774 and Pf1N1B4_5775 are separated by 433 nucleotides
Pf1N1B4_5772 - Heme d1 biosynthesis protein NirJ, at 208,778 to 209,956
_5772
Pf1N1B4_5773 - Uroporphyrinogen-III methyltransferase (EC 2.1.1.107), at 210,027 to 210,866
_5773
Pf1N1B4_5774 - Nitrite reductase associated c-type cytochorome NirN, at 210,863 to 212,356
_5774
Pf1N1B4_5775 - hypothetical protein, at 212,790 to 213,143
_5775
Position (kb) 210
211
212
213 Strain fitness (log2 ratio) -2
-1
0
1 at 210.378 kb on + strand, within Pf1N1B4_5773 at 210.579 kb on + strand, within Pf1N1B4_5773 at 210.580 kb on - strand, within Pf1N1B4_5773 at 211.228 kb on + strand, within Pf1N1B4_5774 at 211.229 kb on - strand, within Pf1N1B4_5774 at 211.406 kb on + strand, within Pf1N1B4_5774 at 211.439 kb on + strand, within Pf1N1B4_5774 at 211.439 kb on + strand, within Pf1N1B4_5774 at 211.542 kb on - strand at 211.542 kb on - strand, within Pf1N1B4_5774 at 211.542 kb on - strand, within Pf1N1B4_5774 at 211.793 kb on + strand, within Pf1N1B4_5774 at 211.875 kb on + strand, within Pf1N1B4_5774 at 211.925 kb on - strand, within Pf1N1B4_5774 at 212.218 kb on + strand at 212.249 kb on + strand at 212.309 kb on + strand at 212.309 kb on + strand at 212.309 kb on + strand at 212.309 kb on + strand at 212.309 kb on + strand at 212.310 kb on - strand at 212.310 kb on - strand at 212.310 kb on - strand at 212.310 kb on - strand at 212.403 kb on + strand at 212.660 kb on + strand at 212.740 kb on - strand at 213.251 kb on + strand at 213.251 kb on + strand at 213.324 kb on - strand at 213.324 kb on - strand at 213.327 kb on - strand at 213.349 kb on - strand at 213.349 kb on - strand at 213.352 kb on + strand at 213.352 kb on + strand at 213.353 kb on - strand at 213.353 kb on - strand at 213.353 kb on - strand at 213.353 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction sodium fluoride 12.5 mM remove 210,378 + Pf1N1B4_5773 0.42 -0.7 210,579 + Pf1N1B4_5773 0.66 -0.2 210,580 - Pf1N1B4_5773 0.66 -0.5 211,228 + Pf1N1B4_5774 0.24 -0.8 211,229 - Pf1N1B4_5774 0.24 -1.3 211,406 + Pf1N1B4_5774 0.36 -1.4 211,439 + Pf1N1B4_5774 0.39 -0.7 211,439 + Pf1N1B4_5774 0.39 -0.9 211,542 - +0.5 211,542 - Pf1N1B4_5774 0.45 -0.7 211,542 - Pf1N1B4_5774 0.45 -0.5 211,793 + Pf1N1B4_5774 0.62 -0.1 211,875 + Pf1N1B4_5774 0.68 +0.9 211,925 - Pf1N1B4_5774 0.71 -2.6 212,218 + +0.9 212,249 + -0.9 212,309 + +0.9 212,309 + -1.9 212,309 + +1.5 212,309 + -0.1 212,309 + -0.4 212,310 - +1.5 212,310 - -1.4 212,310 - -0.6 212,310 - -0.8 212,403 + +0.6 212,660 + -0.1 212,740 - +0.5 213,251 + -0.7 213,251 + -0.1 213,324 - -1.4 213,324 - +0.6 213,327 - -1.3 213,349 - +0.6 213,349 - -0.7 213,352 + +0.2 213,352 + +0.2 213,353 - +0.3 213,353 - +0.9 213,353 - +0.9 213,353 - -0.7
Or see this region's nucleotide sequence