Experiment: sodium fluoride 12.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5707 and Pf1N1B4_5708 are separated by 84 nucleotides Pf1N1B4_5708 and Pf1N1B4_5709 are separated by 355 nucleotides
Pf1N1B4_5707 - NADH dehydrogenase (EC 1.6.99.3), at 145,671 to 146,762
_5707
Pf1N1B4_5708 - Transcriptional regulator, TetR family, at 146,847 to 147,461
_5708
Pf1N1B4_5709 - 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34), at 147,817 to 149,052
_5709
Position (kb) 146
147
148 Strain fitness (log2 ratio) -1
0
1
2 at 145.847 kb on + strand, within Pf1N1B4_5707 at 146.047 kb on + strand, within Pf1N1B4_5707 at 146.048 kb on - strand, within Pf1N1B4_5707 at 146.048 kb on - strand, within Pf1N1B4_5707 at 146.048 kb on - strand at 146.082 kb on - strand, within Pf1N1B4_5707 at 146.132 kb on + strand, within Pf1N1B4_5707 at 146.132 kb on + strand, within Pf1N1B4_5707 at 146.132 kb on + strand, within Pf1N1B4_5707 at 146.133 kb on - strand, within Pf1N1B4_5707 at 146.133 kb on - strand, within Pf1N1B4_5707 at 146.151 kb on + strand, within Pf1N1B4_5707 at 146.152 kb on - strand, within Pf1N1B4_5707 at 146.190 kb on - strand, within Pf1N1B4_5707 at 146.348 kb on + strand, within Pf1N1B4_5707 at 146.348 kb on + strand, within Pf1N1B4_5707 at 146.349 kb on - strand at 146.549 kb on - strand at 146.555 kb on - strand, within Pf1N1B4_5707 at 146.555 kb on - strand, within Pf1N1B4_5707 at 146.582 kb on - strand, within Pf1N1B4_5707 at 146.790 kb on - strand at 147.330 kb on - strand, within Pf1N1B4_5708 at 147.332 kb on - strand, within Pf1N1B4_5708 at 147.332 kb on - strand, within Pf1N1B4_5708 at 147.480 kb on - strand at 147.567 kb on + strand at 147.567 kb on + strand at 147.567 kb on + strand at 147.590 kb on + strand at 147.591 kb on - strand at 147.591 kb on - strand at 147.591 kb on - strand at 147.623 kb on + strand at 147.747 kb on - strand at 148.148 kb on + strand, within Pf1N1B4_5709 at 148.148 kb on + strand, within Pf1N1B4_5709 at 148.149 kb on - strand, within Pf1N1B4_5709 at 148.278 kb on + strand, within Pf1N1B4_5709
Per-strain Table
Position Strand Gene LocusTag Fraction sodium fluoride 12.5 mM remove 145,847 + Pf1N1B4_5707 0.16 -0.9 146,047 + Pf1N1B4_5707 0.34 -0.8 146,048 - Pf1N1B4_5707 0.35 -0.1 146,048 - Pf1N1B4_5707 0.35 -1.0 146,048 - -1.4 146,082 - Pf1N1B4_5707 0.38 -0.4 146,132 + Pf1N1B4_5707 0.42 +1.9 146,132 + Pf1N1B4_5707 0.42 -1.1 146,132 + Pf1N1B4_5707 0.42 -1.4 146,133 - Pf1N1B4_5707 0.42 +0.1 146,133 - Pf1N1B4_5707 0.42 -0.7 146,151 + Pf1N1B4_5707 0.44 +0.5 146,152 - Pf1N1B4_5707 0.44 +0.9 146,190 - Pf1N1B4_5707 0.48 +0.9 146,348 + Pf1N1B4_5707 0.62 -0.1 146,348 + Pf1N1B4_5707 0.62 -0.7 146,349 - +0.9 146,549 - -1.4 146,555 - Pf1N1B4_5707 0.81 +0.3 146,555 - Pf1N1B4_5707 0.81 +0.9 146,582 - Pf1N1B4_5707 0.83 +0.9 146,790 - +0.1 147,330 - Pf1N1B4_5708 0.79 -0.7 147,332 - Pf1N1B4_5708 0.79 -0.5 147,332 - Pf1N1B4_5708 0.79 -1.1 147,480 - +0.3 147,567 + -0.7 147,567 + -1.4 147,567 + +0.4 147,590 + +0.9 147,591 - -0.8 147,591 - -0.8 147,591 - -1.7 147,623 + -0.1 147,747 - -1.4 148,148 + Pf1N1B4_5709 0.27 -1.1 148,148 + Pf1N1B4_5709 0.27 +0.2 148,149 - Pf1N1B4_5709 0.27 -0.2 148,278 + Pf1N1B4_5709 0.37 +0.9
Or see this region's nucleotide sequence