Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4806

Experiment: sodium fluoride 12.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4805 and Pf1N1B4_4806 are separated by 147 nucleotidesPf1N1B4_4806 and Pf1N1B4_4807 are separated by 305 nucleotides Pf1N1B4_4805 - ABC transporter permease protein, at 5,307,915 to 5,308,793 _4805 Pf1N1B4_4806 - Argininosuccinate lyase (EC 4.3.2.1), at 5,308,941 to 5,310,368 _4806 Pf1N1B4_4807 - Transcriptional regulator, at 5,310,674 to 5,311,639 _4807 Position (kb) 5308 5309 5310 5311Strain fitness (log2 ratio) -2 -1 0 1 2at 5308.045 kb on + strand, within Pf1N1B4_4805at 5308.048 kb on + strand, within Pf1N1B4_4805at 5308.049 kb on - strandat 5308.049 kb on - strand, within Pf1N1B4_4805at 5308.049 kb on - strandat 5308.066 kb on + strand, within Pf1N1B4_4805at 5308.067 kb on - strand, within Pf1N1B4_4805at 5308.280 kb on - strand, within Pf1N1B4_4805at 5308.451 kb on - strand, within Pf1N1B4_4805at 5308.451 kb on - strand, within Pf1N1B4_4805at 5308.451 kb on - strand, within Pf1N1B4_4805at 5308.577 kb on + strand, within Pf1N1B4_4805at 5308.609 kb on + strand, within Pf1N1B4_4805at 5308.696 kb on + strand, within Pf1N1B4_4805at 5308.696 kb on + strand, within Pf1N1B4_4805at 5308.697 kb on - strand, within Pf1N1B4_4805at 5308.710 kb on + strandat 5308.711 kb on - strandat 5308.711 kb on - strandat 5308.942 kb on + strandat 5308.943 kb on - strandat 5308.960 kb on + strandat 5308.960 kb on + strandat 5308.961 kb on - strandat 5308.961 kb on - strandat 5308.961 kb on - strandat 5309.793 kb on + strand, within Pf1N1B4_4806at 5309.793 kb on + strand, within Pf1N1B4_4806at 5309.793 kb on + strand, within Pf1N1B4_4806at 5309.794 kb on - strand, within Pf1N1B4_4806at 5309.794 kb on - strand, within Pf1N1B4_4806at 5310.492 kb on - strandat 5310.667 kb on - strandat 5310.720 kb on + strandat 5310.960 kb on + strandat 5310.960 kb on + strand, within Pf1N1B4_4807at 5310.994 kb on + strand, within Pf1N1B4_4807at 5311.226 kb on + strand, within Pf1N1B4_4807at 5311.328 kb on + strand, within Pf1N1B4_4807

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 12.5 mM
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5,308,045 + Pf1N1B4_4805 0.15 -0.6
5,308,048 + Pf1N1B4_4805 0.15 -0.7
5,308,049 - -1.2
5,308,049 - Pf1N1B4_4805 0.15 -2.2
5,308,049 - -0.5
5,308,066 + Pf1N1B4_4805 0.17 +0.8
5,308,067 - Pf1N1B4_4805 0.17 -1.7
5,308,280 - Pf1N1B4_4805 0.42 -0.4
5,308,451 - Pf1N1B4_4805 0.61 -1.0
5,308,451 - Pf1N1B4_4805 0.61 -2.5
5,308,451 - Pf1N1B4_4805 0.61 +2.2
5,308,577 + Pf1N1B4_4805 0.75 -0.0
5,308,609 + Pf1N1B4_4805 0.79 -0.5
5,308,696 + Pf1N1B4_4805 0.89 -2.4
5,308,696 + Pf1N1B4_4805 0.89 -1.0
5,308,697 - Pf1N1B4_4805 0.89 -0.6
5,308,710 + +0.5
5,308,711 - -0.2
5,308,711 - -0.0
5,308,942 + -1.7
5,308,943 - -0.7
5,308,960 + +1.8
5,308,960 + -0.2
5,308,961 - -0.6
5,308,961 - -2.0
5,308,961 - -2.2
5,309,793 + Pf1N1B4_4806 0.60 -1.2
5,309,793 + Pf1N1B4_4806 0.60 -0.2
5,309,793 + Pf1N1B4_4806 0.60 -1.7
5,309,794 - Pf1N1B4_4806 0.60 -1.7
5,309,794 - Pf1N1B4_4806 0.60 +0.1
5,310,492 - +0.0
5,310,667 - -0.4
5,310,720 + +0.3
5,310,960 + -0.2
5,310,960 + Pf1N1B4_4807 0.30 -0.4
5,310,994 + Pf1N1B4_4807 0.33 -0.3
5,311,226 + Pf1N1B4_4807 0.57 -2.0
5,311,328 + Pf1N1B4_4807 0.68 +0.8

Or see this region's nucleotide sequence