Experiment: sodium fluoride 12.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4805 and Pf1N1B4_4806 are separated by 147 nucleotides Pf1N1B4_4806 and Pf1N1B4_4807 are separated by 305 nucleotides
Pf1N1B4_4805 - ABC transporter permease protein, at 5,307,915 to 5,308,793
_4805
Pf1N1B4_4806 - Argininosuccinate lyase (EC 4.3.2.1), at 5,308,941 to 5,310,368
_4806
Pf1N1B4_4807 - Transcriptional regulator, at 5,310,674 to 5,311,639
_4807
Position (kb)
5308
5309
5310
5311 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5308.045 kb on + strand, within Pf1N1B4_4805 at 5308.048 kb on + strand, within Pf1N1B4_4805 at 5308.049 kb on - strand at 5308.049 kb on - strand, within Pf1N1B4_4805 at 5308.049 kb on - strand at 5308.066 kb on + strand, within Pf1N1B4_4805 at 5308.067 kb on - strand, within Pf1N1B4_4805 at 5308.280 kb on - strand, within Pf1N1B4_4805 at 5308.451 kb on - strand, within Pf1N1B4_4805 at 5308.451 kb on - strand, within Pf1N1B4_4805 at 5308.451 kb on - strand, within Pf1N1B4_4805 at 5308.577 kb on + strand, within Pf1N1B4_4805 at 5308.609 kb on + strand, within Pf1N1B4_4805 at 5308.696 kb on + strand, within Pf1N1B4_4805 at 5308.696 kb on + strand, within Pf1N1B4_4805 at 5308.697 kb on - strand, within Pf1N1B4_4805 at 5308.710 kb on + strand at 5308.711 kb on - strand at 5308.711 kb on - strand at 5308.942 kb on + strand at 5308.943 kb on - strand at 5308.960 kb on + strand at 5308.960 kb on + strand at 5308.961 kb on - strand at 5308.961 kb on - strand at 5308.961 kb on - strand at 5309.793 kb on + strand, within Pf1N1B4_4806 at 5309.793 kb on + strand, within Pf1N1B4_4806 at 5309.793 kb on + strand, within Pf1N1B4_4806 at 5309.794 kb on - strand, within Pf1N1B4_4806 at 5309.794 kb on - strand, within Pf1N1B4_4806 at 5310.492 kb on - strand at 5310.667 kb on - strand at 5310.720 kb on + strand at 5310.960 kb on + strand at 5310.960 kb on + strand, within Pf1N1B4_4807 at 5310.994 kb on + strand, within Pf1N1B4_4807 at 5311.226 kb on + strand, within Pf1N1B4_4807 at 5311.328 kb on + strand, within Pf1N1B4_4807
Per-strain Table
Position Strand Gene LocusTag Fraction sodium fluoride 12.5 mM remove 5,308,045 + Pf1N1B4_4805 0.15 -0.6 5,308,048 + Pf1N1B4_4805 0.15 -0.7 5,308,049 - -1.2 5,308,049 - Pf1N1B4_4805 0.15 -2.2 5,308,049 - -0.5 5,308,066 + Pf1N1B4_4805 0.17 +0.8 5,308,067 - Pf1N1B4_4805 0.17 -1.7 5,308,280 - Pf1N1B4_4805 0.42 -0.4 5,308,451 - Pf1N1B4_4805 0.61 -1.0 5,308,451 - Pf1N1B4_4805 0.61 -2.5 5,308,451 - Pf1N1B4_4805 0.61 +2.2 5,308,577 + Pf1N1B4_4805 0.75 -0.0 5,308,609 + Pf1N1B4_4805 0.79 -0.5 5,308,696 + Pf1N1B4_4805 0.89 -2.4 5,308,696 + Pf1N1B4_4805 0.89 -1.0 5,308,697 - Pf1N1B4_4805 0.89 -0.6 5,308,710 + +0.5 5,308,711 - -0.2 5,308,711 - -0.0 5,308,942 + -1.7 5,308,943 - -0.7 5,308,960 + +1.8 5,308,960 + -0.2 5,308,961 - -0.6 5,308,961 - -2.0 5,308,961 - -2.2 5,309,793 + Pf1N1B4_4806 0.60 -1.2 5,309,793 + Pf1N1B4_4806 0.60 -0.2 5,309,793 + Pf1N1B4_4806 0.60 -1.7 5,309,794 - Pf1N1B4_4806 0.60 -1.7 5,309,794 - Pf1N1B4_4806 0.60 +0.1 5,310,492 - +0.0 5,310,667 - -0.4 5,310,720 + +0.3 5,310,960 + -0.2 5,310,960 + Pf1N1B4_4807 0.30 -0.4 5,310,994 + Pf1N1B4_4807 0.33 -0.3 5,311,226 + Pf1N1B4_4807 0.57 -2.0 5,311,328 + Pf1N1B4_4807 0.68 +0.8
Or see this region's nucleotide sequence