Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4736

Experiment: sodium fluoride 12.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4735 and Pf1N1B4_4736 are separated by 51 nucleotidesPf1N1B4_4736 and Pf1N1B4_4737 are separated by 1 nucleotidesPf1N1B4_4737 and Pf1N1B4_4738 are separated by 698 nucleotides Pf1N1B4_4735 - Fap amyloid fibril major component, at 5,232,665 to 5,233,954 _4735 Pf1N1B4_4736 - Fap amyloid fibril minor component, at 5,234,006 to 5,234,578 _4736 Pf1N1B4_4737 - hypothetical protein, at 5,234,580 to 5,234,801 _4737 Pf1N1B4_4738 - Ribosylnicotinamide kinase (EC 2.7.1.22), at 5,235,500 to 5,236,024 _4738 Position (kb) 5234 5235Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5233.035 kb on - strand, within Pf1N1B4_4735at 5233.035 kb on - strand, within Pf1N1B4_4735at 5233.349 kb on - strand, within Pf1N1B4_4735at 5233.815 kb on + strand, within Pf1N1B4_4735at 5233.847 kb on - strandat 5233.889 kb on + strandat 5233.890 kb on - strandat 5233.968 kb on - strandat 5233.971 kb on + strandat 5233.971 kb on + strandat 5233.971 kb on + strandat 5233.982 kb on - strandat 5233.994 kb on + strandat 5234.021 kb on + strandat 5234.218 kb on + strand, within Pf1N1B4_4736at 5234.219 kb on - strand, within Pf1N1B4_4736at 5234.224 kb on + strand, within Pf1N1B4_4736at 5234.224 kb on + strand, within Pf1N1B4_4736at 5234.225 kb on - strand, within Pf1N1B4_4736at 5234.228 kb on + strand, within Pf1N1B4_4736at 5234.735 kb on + strandat 5235.233 kb on + strandat 5235.233 kb on + strandat 5235.233 kb on + strandat 5235.234 kb on - strandat 5235.244 kb on + strandat 5235.353 kb on + strandat 5235.353 kb on + strandat 5235.439 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 12.5 mM
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5,233,035 - Pf1N1B4_4735 0.29 +0.1
5,233,035 - Pf1N1B4_4735 0.29 +1.1
5,233,349 - Pf1N1B4_4735 0.53 -0.8
5,233,815 + Pf1N1B4_4735 0.89 -0.2
5,233,847 - +1.8
5,233,889 + +1.4
5,233,890 - -0.1
5,233,968 - +0.1
5,233,971 + -0.4
5,233,971 + -0.2
5,233,971 + +0.2
5,233,982 - -1.3
5,233,994 + -0.6
5,234,021 + +0.7
5,234,218 + Pf1N1B4_4736 0.37 -0.2
5,234,219 - Pf1N1B4_4736 0.37 -0.2
5,234,224 + Pf1N1B4_4736 0.38 -2.9
5,234,224 + Pf1N1B4_4736 0.38 +0.8
5,234,225 - Pf1N1B4_4736 0.38 -1.2
5,234,228 + Pf1N1B4_4736 0.39 -1.2
5,234,735 + +0.4
5,235,233 + +0.1
5,235,233 + +0.2
5,235,233 + +0.8
5,235,234 - +0.6
5,235,244 + -1.5
5,235,353 + +0.8
5,235,353 + +0.8
5,235,439 + +0.3

Or see this region's nucleotide sequence