Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4601

Experiment: sodium fluoride 12.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4600 and Pf1N1B4_4601 are separated by 14 nucleotidesPf1N1B4_4601 and Pf1N1B4_4602 are separated by 76 nucleotides Pf1N1B4_4600 - Lysine decarboxylase, inducible (EC 4.1.1.18), at 5,072,925 to 5,075,180 _4600 Pf1N1B4_4601 - Streptothricin acetyltransferase, Streptomyces lavendulae type, at 5,075,195 to 5,075,698 _4601 Pf1N1B4_4602 - Transcriptional regulators, LysR family, at 5,075,775 to 5,076,668 _4602 Position (kb) 5075 5076Strain fitness (log2 ratio) -1 0 1 2at 5074.414 kb on + strand, within Pf1N1B4_4600at 5074.415 kb on - strand, within Pf1N1B4_4600at 5074.486 kb on + strandat 5074.486 kb on + strand, within Pf1N1B4_4600at 5074.626 kb on + strand, within Pf1N1B4_4600at 5074.863 kb on + strandat 5074.863 kb on + strand, within Pf1N1B4_4600at 5074.863 kb on + strand, within Pf1N1B4_4600at 5074.864 kb on - strand, within Pf1N1B4_4600at 5075.058 kb on + strandat 5075.154 kb on + strandat 5075.154 kb on + strandat 5075.154 kb on + strandat 5075.154 kb on + strandat 5075.155 kb on - strandat 5075.220 kb on - strandat 5075.264 kb on + strand, within Pf1N1B4_4601at 5075.265 kb on - strand, within Pf1N1B4_4601at 5075.265 kb on - strand, within Pf1N1B4_4601at 5075.265 kb on - strandat 5075.265 kb on - strand, within Pf1N1B4_4601at 5075.266 kb on + strand, within Pf1N1B4_4601at 5075.266 kb on + strand, within Pf1N1B4_4601at 5075.267 kb on - strand, within Pf1N1B4_4601at 5075.869 kb on + strand, within Pf1N1B4_4602at 5076.131 kb on - strand, within Pf1N1B4_4602at 5076.131 kb on - strand, within Pf1N1B4_4602at 5076.406 kb on + strand, within Pf1N1B4_4602at 5076.406 kb on + strand, within Pf1N1B4_4602at 5076.454 kb on + strand, within Pf1N1B4_4602

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 12.5 mM
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5,074,414 + Pf1N1B4_4600 0.66 -0.8
5,074,415 - Pf1N1B4_4600 0.66 +1.3
5,074,486 + -0.5
5,074,486 + Pf1N1B4_4600 0.69 -0.9
5,074,626 + Pf1N1B4_4600 0.75 -0.5
5,074,863 + +0.5
5,074,863 + Pf1N1B4_4600 0.86 +1.5
5,074,863 + Pf1N1B4_4600 0.86 +1.7
5,074,864 - Pf1N1B4_4600 0.86 +1.9
5,075,058 + -1.1
5,075,154 + -0.7
5,075,154 + +2.7
5,075,154 + -0.4
5,075,154 + +0.4
5,075,155 - +0.7
5,075,220 - +0.0
5,075,264 + Pf1N1B4_4601 0.14 -0.3
5,075,265 - Pf1N1B4_4601 0.14 +0.9
5,075,265 - Pf1N1B4_4601 0.14 -1.2
5,075,265 - +0.3
5,075,265 - Pf1N1B4_4601 0.14 -1.0
5,075,266 + Pf1N1B4_4601 0.14 -1.0
5,075,266 + Pf1N1B4_4601 0.14 -1.1
5,075,267 - Pf1N1B4_4601 0.14 -1.1
5,075,869 + Pf1N1B4_4602 0.11 +1.9
5,076,131 - Pf1N1B4_4602 0.40 -1.7
5,076,131 - Pf1N1B4_4602 0.40 -0.3
5,076,406 + Pf1N1B4_4602 0.71 +0.8
5,076,406 + Pf1N1B4_4602 0.71 +0.1
5,076,454 + Pf1N1B4_4602 0.76 +0.9

Or see this region's nucleotide sequence