Experiment: sodium fluoride 12.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4600 and Pf1N1B4_4601 are separated by 14 nucleotides Pf1N1B4_4601 and Pf1N1B4_4602 are separated by 76 nucleotides
Pf1N1B4_4600 - Lysine decarboxylase, inducible (EC 4.1.1.18), at 5,072,925 to 5,075,180
_4600
Pf1N1B4_4601 - Streptothricin acetyltransferase, Streptomyces lavendulae type, at 5,075,195 to 5,075,698
_4601
Pf1N1B4_4602 - Transcriptional regulators, LysR family, at 5,075,775 to 5,076,668
_4602
Position (kb)
5075
5076 Strain fitness (log2 ratio)
-1
0
1
2 at 5074.414 kb on + strand, within Pf1N1B4_4600 at 5074.415 kb on - strand, within Pf1N1B4_4600 at 5074.486 kb on + strand at 5074.486 kb on + strand, within Pf1N1B4_4600 at 5074.626 kb on + strand, within Pf1N1B4_4600 at 5074.863 kb on + strand at 5074.863 kb on + strand, within Pf1N1B4_4600 at 5074.863 kb on + strand, within Pf1N1B4_4600 at 5074.864 kb on - strand, within Pf1N1B4_4600 at 5075.058 kb on + strand at 5075.154 kb on + strand at 5075.154 kb on + strand at 5075.154 kb on + strand at 5075.154 kb on + strand at 5075.155 kb on - strand at 5075.220 kb on - strand at 5075.264 kb on + strand, within Pf1N1B4_4601 at 5075.265 kb on - strand, within Pf1N1B4_4601 at 5075.265 kb on - strand, within Pf1N1B4_4601 at 5075.265 kb on - strand at 5075.265 kb on - strand, within Pf1N1B4_4601 at 5075.266 kb on + strand, within Pf1N1B4_4601 at 5075.266 kb on + strand, within Pf1N1B4_4601 at 5075.267 kb on - strand, within Pf1N1B4_4601 at 5075.869 kb on + strand, within Pf1N1B4_4602 at 5076.131 kb on - strand, within Pf1N1B4_4602 at 5076.131 kb on - strand, within Pf1N1B4_4602 at 5076.406 kb on + strand, within Pf1N1B4_4602 at 5076.406 kb on + strand, within Pf1N1B4_4602 at 5076.454 kb on + strand, within Pf1N1B4_4602
Per-strain Table
Position Strand Gene LocusTag Fraction sodium fluoride 12.5 mM remove 5,074,414 + Pf1N1B4_4600 0.66 -0.8 5,074,415 - Pf1N1B4_4600 0.66 +1.3 5,074,486 + -0.5 5,074,486 + Pf1N1B4_4600 0.69 -0.9 5,074,626 + Pf1N1B4_4600 0.75 -0.5 5,074,863 + +0.5 5,074,863 + Pf1N1B4_4600 0.86 +1.5 5,074,863 + Pf1N1B4_4600 0.86 +1.7 5,074,864 - Pf1N1B4_4600 0.86 +1.9 5,075,058 + -1.1 5,075,154 + -0.7 5,075,154 + +2.7 5,075,154 + -0.4 5,075,154 + +0.4 5,075,155 - +0.7 5,075,220 - +0.0 5,075,264 + Pf1N1B4_4601 0.14 -0.3 5,075,265 - Pf1N1B4_4601 0.14 +0.9 5,075,265 - Pf1N1B4_4601 0.14 -1.2 5,075,265 - +0.3 5,075,265 - Pf1N1B4_4601 0.14 -1.0 5,075,266 + Pf1N1B4_4601 0.14 -1.0 5,075,266 + Pf1N1B4_4601 0.14 -1.1 5,075,267 - Pf1N1B4_4601 0.14 -1.1 5,075,869 + Pf1N1B4_4602 0.11 +1.9 5,076,131 - Pf1N1B4_4602 0.40 -1.7 5,076,131 - Pf1N1B4_4602 0.40 -0.3 5,076,406 + Pf1N1B4_4602 0.71 +0.8 5,076,406 + Pf1N1B4_4602 0.71 +0.1 5,076,454 + Pf1N1B4_4602 0.76 +0.9
Or see this region's nucleotide sequence