Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02705 and HSERO_RS02710 are separated by 28 nucleotides HSERO_RS02710 and HSERO_RS02715 are separated by 329 nucleotides
HSERO_RS02705: HSERO_RS02705 - FAD-dependent oxidoreductase, at 597,730 to 599,499
_RS02705
HSERO_RS02710: HSERO_RS02710 - Zn-dependent hydrolase, at 599,528 to 600,487
_RS02710
HSERO_RS02715: HSERO_RS02715 - IclR family transcriptional regulator, at 600,817 to 601,590
_RS02715
Position (kb) 599
600
601 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 598.626 kb on - strand, within HSERO_RS02705 at 598.779 kb on - strand, within HSERO_RS02705 at 598.883 kb on - strand, within HSERO_RS02705 at 599.100 kb on - strand, within HSERO_RS02705 at 599.172 kb on - strand, within HSERO_RS02705 at 599.193 kb on - strand, within HSERO_RS02705 at 599.224 kb on - strand, within HSERO_RS02705 at 599.282 kb on - strand, within HSERO_RS02705 at 599.595 kb on + strand at 599.618 kb on + strand at 599.818 kb on + strand, within HSERO_RS02710 at 599.863 kb on + strand at 599.893 kb on + strand, within HSERO_RS02710 at 599.987 kb on + strand, within HSERO_RS02710 at 599.997 kb on + strand, within HSERO_RS02710 at 600.002 kb on + strand, within HSERO_RS02710 at 600.074 kb on + strand, within HSERO_RS02710 at 600.082 kb on - strand, within HSERO_RS02710 at 600.311 kb on + strand, within HSERO_RS02710 at 600.319 kb on - strand, within HSERO_RS02710 at 600.357 kb on - strand, within HSERO_RS02710 at 600.443 kb on - strand at 600.582 kb on + strand at 600.582 kb on + strand at 600.617 kb on + strand at 600.728 kb on + strand at 600.745 kb on - strand at 601.023 kb on + strand, within HSERO_RS02715 at 601.131 kb on + strand, within HSERO_RS02715 at 601.232 kb on + strand, within HSERO_RS02715
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 598,626 - HSERO_RS02705 0.51 -0.0 598,779 - HSERO_RS02705 0.59 +4.6 598,883 - HSERO_RS02705 0.65 +1.6 599,100 - HSERO_RS02705 0.77 +0.5 599,172 - HSERO_RS02705 0.81 -0.8 599,193 - HSERO_RS02705 0.83 -0.0 599,224 - HSERO_RS02705 0.84 -0.3 599,282 - HSERO_RS02705 0.88 -0.6 599,595 + +1.1 599,618 + +3.0 599,818 + HSERO_RS02710 0.30 -0.9 599,863 + +1.0 599,893 + HSERO_RS02710 0.38 -0.3 599,987 + HSERO_RS02710 0.48 -0.6 599,997 + HSERO_RS02710 0.49 -0.6 600,002 + HSERO_RS02710 0.49 -0.5 600,074 + HSERO_RS02710 0.57 +0.8 600,082 - HSERO_RS02710 0.58 +0.5 600,311 + HSERO_RS02710 0.82 -1.7 600,319 - HSERO_RS02710 0.82 -0.6 600,357 - HSERO_RS02710 0.86 +0.1 600,443 - -3.0 600,582 + -2.0 600,582 + +0.4 600,617 + +0.5 600,728 + -3.0 600,745 - -0.1 601,023 + HSERO_RS02715 0.27 -0.4 601,131 + HSERO_RS02715 0.41 -0.7 601,232 + HSERO_RS02715 0.54 +0.2
Or see this region's nucleotide sequence