Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02220 and HSERO_RS02225 are separated by 19 nucleotides HSERO_RS02225 and HSERO_RS02230 are separated by 42 nucleotides HSERO_RS02230 and HSERO_RS02235 are separated by 429 nucleotides
HSERO_RS02220: HSERO_RS02220 - xylulokinase, at 484,958 to 486,430
_RS02220
HSERO_RS02225: HSERO_RS02225 - acetyltransferase, at 486,450 to 486,911
_RS02225
HSERO_RS02230: HSERO_RS02230 - methyl-accepting chemotaxis protein, at 486,954 to 488,516
_RS02230
HSERO_RS02235: HSERO_RS02235 - membrane protein, at 488,946 to 489,752
_RS02235
Position (kb) 486
487
488
489 Strain fitness (log2 ratio) -2
-1
0
1 at 485.962 kb on + strand at 486.038 kb on - strand, within HSERO_RS02220 at 486.043 kb on - strand, within HSERO_RS02220 at 486.099 kb on + strand, within HSERO_RS02220 at 486.291 kb on + strand at 486.342 kb on - strand at 486.641 kb on + strand, within HSERO_RS02225 at 486.649 kb on - strand, within HSERO_RS02225 at 486.727 kb on + strand, within HSERO_RS02225 at 486.734 kb on - strand, within HSERO_RS02225 at 486.780 kb on + strand, within HSERO_RS02225 at 486.825 kb on - strand, within HSERO_RS02225 at 486.970 kb on - strand at 487.010 kb on + strand at 487.285 kb on + strand, within HSERO_RS02230 at 487.291 kb on - strand, within HSERO_RS02230 at 487.291 kb on - strand, within HSERO_RS02230 at 487.426 kb on - strand, within HSERO_RS02230 at 487.682 kb on + strand, within HSERO_RS02230 at 487.704 kb on - strand, within HSERO_RS02230 at 487.860 kb on + strand, within HSERO_RS02230 at 487.872 kb on + strand, within HSERO_RS02230 at 487.880 kb on - strand, within HSERO_RS02230 at 488.050 kb on - strand, within HSERO_RS02230 at 488.138 kb on - strand at 488.164 kb on + strand, within HSERO_RS02230 at 488.238 kb on + strand, within HSERO_RS02230 at 488.278 kb on + strand, within HSERO_RS02230 at 488.285 kb on - strand, within HSERO_RS02230 at 488.400 kb on - strand at 488.441 kb on - strand at 488.524 kb on - strand at 488.944 kb on + strand at 488.980 kb on - strand at 489.000 kb on - strand at 489.019 kb on - strand at 489.037 kb on + strand, within HSERO_RS02235 at 489.168 kb on - strand, within HSERO_RS02235 at 489.168 kb on - strand, within HSERO_RS02235 at 489.325 kb on + strand, within HSERO_RS02235 at 489.464 kb on - strand, within HSERO_RS02235
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 485,962 + +1.0 486,038 - HSERO_RS02220 0.73 +0.2 486,043 - HSERO_RS02220 0.74 -0.6 486,099 + HSERO_RS02220 0.77 -0.1 486,291 + -0.9 486,342 - -0.8 486,641 + HSERO_RS02225 0.41 +0.8 486,649 - HSERO_RS02225 0.43 +0.7 486,727 + HSERO_RS02225 0.60 -0.1 486,734 - HSERO_RS02225 0.61 -0.3 486,780 + HSERO_RS02225 0.71 +0.0 486,825 - HSERO_RS02225 0.81 +0.6 486,970 - -1.0 487,010 + -0.8 487,285 + HSERO_RS02230 0.21 -0.4 487,291 - HSERO_RS02230 0.22 -0.1 487,291 - HSERO_RS02230 0.22 +0.3 487,426 - HSERO_RS02230 0.30 -1.6 487,682 + HSERO_RS02230 0.47 +0.8 487,704 - HSERO_RS02230 0.48 -1.1 487,860 + HSERO_RS02230 0.58 +0.6 487,872 + HSERO_RS02230 0.59 -2.2 487,880 - HSERO_RS02230 0.59 +0.8 488,050 - HSERO_RS02230 0.70 +0.1 488,138 - -0.3 488,164 + HSERO_RS02230 0.77 +0.6 488,238 + HSERO_RS02230 0.82 -1.0 488,278 + HSERO_RS02230 0.85 +0.1 488,285 - HSERO_RS02230 0.85 -0.4 488,400 - +1.0 488,441 - +1.0 488,524 - +0.0 488,944 + +0.2 488,980 - +0.8 489,000 - +0.8 489,019 - -1.0 489,037 + HSERO_RS02235 0.11 +0.1 489,168 - HSERO_RS02235 0.28 +0.1 489,168 - HSERO_RS02235 0.28 +1.3 489,325 + HSERO_RS02235 0.47 +0.2 489,464 - HSERO_RS02235 0.64 -0.6
Or see this region's nucleotide sequence