Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03543

Experiment: a-Cyclodextrin (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Cyclodextrin (C)
3,699,120	+		CCNA_03542	0.38	+3.3
3,699,122	-		CCNA_03542	0.38	-0.9
3,699,136	+		CCNA_03542	0.41	-1.1
3,699,136	+		CCNA_03542	0.41	-0.1
3,699,139	-		CCNA_03542	0.41	-1.9
3,699,251	+		CCNA_03542	0.61	+1.0
3,699,253	+		CCNA_03542	0.62	+1.0
3,699,259	-		CCNA_03542	0.63	-1.4
3,699,314	+		CCNA_03542	0.73	+0.2
3,699,314	+		CCNA_03542	0.73	-2.0
3,699,405	+		CCNA_03542	0.89	-1.4
3,699,405	+		CCNA_03542	0.89	+0.9
3,699,405	-		CCNA_03542	0.89	-0.6
3,699,413	-				-2.4
3,699,450	+				+0.2
3,699,450	+				-0.6
3,699,450	+				-0.1
3,699,450	+				+0.1
3,699,450	+				-0.9
3,699,450	+				-1.3
3,699,450	+				+0.2
3,699,450	+				+0.1
3,699,450	+				-0.1
3,699,450	+				-1.8
3,699,450	+				+0.4
3,699,450	+				-0.5
3,699,450	+				+0.7
3,699,450	+				-0.8
3,699,453	-				-2.5
3,699,458	-				-0.9
3,699,458	-				-2.0
3,699,458	-				-1.8
3,699,458	-				-2.2
3,699,458	-				-0.1
3,699,458	-				-3.0
3,699,479	+				-0.7
3,699,487	-				-2.4
3,699,529	+				-0.7
3,699,529	+				+0.2
3,699,532	-				-1.1
3,699,541	+				+0.5
3,699,541	+				-0.2
3,699,541	+				+1.6
3,699,541	+				+0.4
3,699,541	+				+0.6
3,699,551	+				+0.4
3,699,559	-				-3.4
3,699,566	+				+1.3
3,699,566	+				+0.8
3,699,566	+				-0.3
3,699,566	+				+0.7
3,699,566	+				+1.6
3,699,566	+				+1.1
3,699,566	+				+1.0
3,699,566	+				+1.4
3,699,566	+				+0.8
3,699,566	+				+0.1
3,699,566	+				-1.6
3,699,574	-				-1.5
3,699,574	-				-2.4
3,699,574	-				-1.6
3,699,574	-				-1.6
3,699,574	-				-0.5
3,699,574	-				-0.6
3,699,574	-				-3.1
3,699,574	-				-1.0
3,699,576	+				-1.8
3,699,579	-				-2.0
3,699,584	-				+2.5
3,699,586	+				-0.8
3,699,586	+				+0.6
3,699,635	+				+0.8
3,699,635	+				-2.4
3,699,635	+				-1.1
3,699,662	-				-0.2
3,699,677	+				-0.6
3,699,701	+				+1.1
3,699,715	+				-2.3
3,699,715	+				-0.8
3,699,741	+				-0.6
3,699,749	+				+1.4
3,699,779	-				+0.1
3,699,799	+				-2.0
3,699,799	+				-1.3
3,699,799	+				-1.9
3,699,799	+				-2.9
3,699,807	-				+0.0
3,699,807	-				-0.9
3,699,807	-				+0.3
3,699,807	-				-0.4
3,699,847	+				-0.3
3,699,855	-				-0.5
3,699,892	-				-1.0
3,699,894	+				-0.9
3,699,917	+				-1.1
3,699,969	-				+0.4
3,699,969	-				+0.1
3,700,029	+				-0.1
3,700,029	+				-3.2
3,700,029	+				+1.1
3,700,029	+				+0.1
3,700,031	-				-1.1
3,700,037	-				-0.5
3,700,048	-				-2.4
3,700,053	+				+0.4
3,700,154	+				-3.9
3,700,171	+				-0.1
3,700,177	+				-2.1
3,700,182	+				-2.8
3,700,183	+				-2.7
3,700,233	+		CCNA_03543	0.13	-3.3
3,700,240	+		CCNA_03543	0.14	-2.5
3,700,241	-		CCNA_03543	0.14	-2.8
3,700,257	+		CCNA_03543	0.15	-1.8
3,700,265	-		CCNA_03543	0.16	-1.0
3,700,273	+		CCNA_03543	0.16	-2.0
3,700,279	+		CCNA_03543	0.17	-2.4
3,700,279	+		CCNA_03543	0.17	-0.1
3,700,330	+		CCNA_03543	0.21	-2.9
3,700,338	-		CCNA_03543	0.21	-0.3
3,700,381	+		CCNA_03543	0.25	-0.8
3,700,389	-		CCNA_03543	0.25	-2.6
3,700,398	-		CCNA_03543	0.26	-0.9
3,700,460	+		CCNA_03543	0.31	-2.0
3,700,468	-		CCNA_03543	0.32	-1.2
3,700,468	-		CCNA_03543	0.32	-1.0
3,700,518	+		CCNA_03543	0.35	-3.4
3,700,534	-		CCNA_03543	0.37	-2.0
3,700,538	-		CCNA_03543	0.37	-1.1
3,700,549	+		CCNA_03543	0.38	-2.0
3,700,559	+		CCNA_03543	0.39	-2.8
3,700,584	+		CCNA_03543	0.41	+0.4
3,700,588	-		CCNA_03543	0.41	-1.6
3,700,590	-		CCNA_03543	0.41	-0.3
3,700,592	-		CCNA_03543	0.41	+1.7
3,700,661	-		CCNA_03543	0.47	-1.1
3,700,663	+		CCNA_03543	0.47	-2.2
3,700,668	+		CCNA_03543	0.47	-2.4
3,700,668	+		CCNA_03543	0.47	-3.2
3,700,668	+		CCNA_03543	0.47	-2.3
3,700,668	+		CCNA_03543	0.47	-3.3
3,700,676	+		CCNA_03543	0.48	-2.3
3,700,676	+		CCNA_03543	0.48	-3.9
3,700,676	+		CCNA_03543	0.48	-2.8
3,700,676	-		CCNA_03543	0.48	-1.6
3,700,758	+		CCNA_03543	0.54	-1.9
3,700,765	+		CCNA_03543	0.55	-3.7
3,700,765	+		CCNA_03543	0.55	-3.5
3,700,766	-		CCNA_03543	0.55	-2.8
3,700,766	-		CCNA_03543	0.55	-1.1
3,700,773	-		CCNA_03543	0.55	-2.8
3,700,773	-		CCNA_03543	0.55	-0.8
3,700,773	-		CCNA_03543	0.55	-2.6
3,700,803	+		CCNA_03543	0.58	-4.7
3,700,803	+		CCNA_03543	0.58	-0.3
3,700,829	+		CCNA_03543	0.60	-2.1
3,700,864	+		CCNA_03543	0.63	-2.6
3,700,867	-		CCNA_03543	0.63	-1.4
3,700,929	+		CCNA_03543	0.68	-4.7
3,700,929	+		CCNA_03543	0.68	-0.5
3,700,929	+		CCNA_03543	0.68	-3.6
3,700,937	-		CCNA_03543	0.68	-2.7
3,700,937	-		CCNA_03543	0.68	-1.7
3,700,937	-		CCNA_03543	0.68	-1.1
3,700,937	-		CCNA_03543	0.68	-1.4
3,700,937	-		CCNA_03543	0.68	-0.1
3,700,973	+		CCNA_03543	0.71	-3.8
3,700,995	+		CCNA_03543	0.73	-4.6
3,701,003	-		CCNA_03543	0.73	-1.3
3,701,003	-		CCNA_03543	0.73	-0.5
3,701,003	-		CCNA_03543	0.73	-0.3
3,701,003	-		CCNA_03543	0.73	-1.0
3,701,015	+		CCNA_03543	0.74	-3.9
3,701,017	+		CCNA_03543	0.75	-2.0
3,701,017	+		CCNA_03543	0.75	-3.9
3,701,025	-		CCNA_03543	0.75	-1.8
3,701,025	-		CCNA_03543	0.75	-0.8
3,701,040	+		CCNA_03543	0.76	-3.9
3,701,050	+		CCNA_03543	0.77	-4.3
3,701,096	+		CCNA_03543	0.81	-2.8
3,701,096	+		CCNA_03543	0.81	-3.6
3,701,096	+		CCNA_03543	0.81	-0.2
3,701,099	-		CCNA_03543	0.81	-1.4
3,701,101	+		CCNA_03543	0.81	-0.5
3,701,104	-		CCNA_03543	0.81	-1.1
3,701,104	-		CCNA_03543	0.81	-1.8
3,701,104	-		CCNA_03543	0.81	-0.3
3,701,104	-		CCNA_03543	0.81	-1.6
3,701,109	-		CCNA_03543	0.82	-0.3
3,701,109	-		CCNA_03543	0.82	-2.3
3,701,109	-		CCNA_03543	0.82	-1.7
3,701,161	+		CCNA_03543	0.86	-3.4
3,701,169	-		CCNA_03543	0.87	-2.4
3,701,176	+		CCNA_03543	0.87	-4.1
3,701,176	+		CCNA_03543	0.87	-3.1
3,701,257	+				-3.1
3,701,274	+				-4.6
3,701,282	-				-2.7
3,701,292	+				-3.7
3,701,323	+				-3.3
3,701,323	+				-2.4
3,701,323	+				-4.5
3,701,323	+				-3.2
3,701,331	-				-2.1
3,701,331	-				-3.5
3,701,331	-				-2.3
3,701,331	-				-1.4
3,701,331	-				-2.0
3,701,331	-				-2.6
3,701,358	-				-0.0
3,701,358	-				+1.4
3,701,950	+				-0.7
3,701,955	+				+0.7
3,701,955	+				-0.3
3,701,963	-				-1.5
3,701,963	-				-2.2
3,701,963	-				-0.0
3,702,018	-				-2.4
3,702,037	+				+1.3
3,702,044	-				+0.1
3,702,044	-				+0.7
3,702,047	+				-0.7
3,702,055	-				-0.4
3,702,059	+				+0.6
3,702,067	+				+2.5
3,702,079	+				+0.4
3,702,091	+				-2.2