Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03028

Experiment: a-Cyclodextrin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03027 and CCNA_03028 are separated by 127 nucleotidesCCNA_03028 and CCNA_03029 overlap by 4 nucleotidesCCNA_03029 and CCNA_03030 are separated by 156 nucleotides CCNA_03027: CCNA_03027 - two-component sensor histidine kinase, at 3,181,645 to 3,182,982 _03027 CCNA_03028: CCNA_03028 - prephenate dehydratase, at 3,183,110 to 3,183,961 _03028 CCNA_03029: CCNA_03029 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 3,183,958 to 3,184,695 _03029 CCNA_03030: CCNA_03030 - cytochrome c2, at 3,184,852 to 3,185,538 _03030 Position (kb) 3183 3184Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 3182.113 kb on - strand, within CCNA_03027at 3182.113 kb on - strand, within CCNA_03027at 3182.147 kb on + strand, within CCNA_03027at 3182.155 kb on - strand, within CCNA_03027at 3182.167 kb on - strand, within CCNA_03027at 3182.174 kb on - strand, within CCNA_03027at 3182.189 kb on - strand, within CCNA_03027at 3182.225 kb on - strand, within CCNA_03027at 3182.272 kb on + strand, within CCNA_03027at 3182.317 kb on + strand, within CCNA_03027at 3182.317 kb on + strand, within CCNA_03027at 3182.317 kb on + strand, within CCNA_03027at 3182.317 kb on + strand, within CCNA_03027at 3182.325 kb on - strand, within CCNA_03027at 3182.325 kb on - strand, within CCNA_03027at 3182.352 kb on + strand, within CCNA_03027at 3182.377 kb on + strand, within CCNA_03027at 3182.382 kb on + strand, within CCNA_03027at 3182.385 kb on - strand, within CCNA_03027at 3182.385 kb on - strand, within CCNA_03027at 3182.393 kb on + strand, within CCNA_03027at 3182.393 kb on + strand, within CCNA_03027at 3182.393 kb on + strand, within CCNA_03027at 3182.393 kb on + strand, within CCNA_03027at 3182.393 kb on + strand, within CCNA_03027at 3182.401 kb on - strand, within CCNA_03027at 3182.401 kb on - strand, within CCNA_03027at 3182.401 kb on - strand, within CCNA_03027at 3182.401 kb on - strand, within CCNA_03027at 3182.401 kb on - strand, within CCNA_03027at 3182.401 kb on - strand, within CCNA_03027at 3182.401 kb on - strand, within CCNA_03027at 3182.401 kb on - strand, within CCNA_03027at 3182.410 kb on + strand, within CCNA_03027at 3182.410 kb on + strand, within CCNA_03027at 3182.418 kb on - strand, within CCNA_03027at 3182.418 kb on - strand, within CCNA_03027at 3182.418 kb on - strand, within CCNA_03027at 3182.418 kb on - strand, within CCNA_03027at 3182.451 kb on - strand, within CCNA_03027at 3182.460 kb on + strand, within CCNA_03027at 3182.509 kb on - strand, within CCNA_03027at 3182.511 kb on - strand, within CCNA_03027at 3182.511 kb on - strand, within CCNA_03027at 3182.512 kb on + strand, within CCNA_03027at 3182.520 kb on - strand, within CCNA_03027at 3182.554 kb on + strand, within CCNA_03027at 3182.564 kb on + strand, within CCNA_03027at 3182.572 kb on - strand, within CCNA_03027at 3182.572 kb on - strand, within CCNA_03027at 3182.582 kb on - strand, within CCNA_03027at 3182.589 kb on + strand, within CCNA_03027at 3182.616 kb on + strandat 3182.658 kb on + strand, within CCNA_03027at 3182.667 kb on - strand, within CCNA_03027at 3182.714 kb on - strand, within CCNA_03027at 3182.738 kb on + strand, within CCNA_03027at 3182.756 kb on + strand, within CCNA_03027at 3182.761 kb on + strand, within CCNA_03027at 3182.813 kb on - strand, within CCNA_03027at 3182.817 kb on + strand, within CCNA_03027at 3182.825 kb on - strand, within CCNA_03027at 3182.867 kb on - strandat 3182.872 kb on + strandat 3182.873 kb on + strandat 3182.881 kb on - strandat 3182.926 kb on + strandat 3182.929 kb on - strandat 3182.941 kb on + strandat 3182.944 kb on - strandat 3182.949 kb on - strandat 3182.949 kb on - strandat 3182.949 kb on - strandat 3182.964 kb on + strandat 3182.972 kb on - strandat 3183.013 kb on + strandat 3183.024 kb on + strandat 3183.032 kb on + strandat 3183.102 kb on + strandat 3183.110 kb on - strandat 3183.110 kb on - strandat 3183.115 kb on - strandat 3183.115 kb on - strandat 3183.141 kb on - strandat 3183.154 kb on + strandat 3183.187 kb on - strandat 3183.196 kb on - strand, within CCNA_03028at 3183.214 kb on + strand, within CCNA_03028at 3183.214 kb on - strand, within CCNA_03028at 3183.232 kb on - strand, within CCNA_03028at 3183.232 kb on - strand, within CCNA_03028at 3183.237 kb on + strand, within CCNA_03028at 3183.313 kb on - strand, within CCNA_03028at 3183.327 kb on + strand, within CCNA_03028at 3183.327 kb on + strand, within CCNA_03028at 3183.327 kb on + strand, within CCNA_03028at 3183.327 kb on + strand, within CCNA_03028at 3183.327 kb on + strand, within CCNA_03028at 3183.335 kb on - strand, within CCNA_03028at 3183.335 kb on - strand, within CCNA_03028at 3183.335 kb on - strand, within CCNA_03028at 3183.335 kb on - strand, within CCNA_03028at 3183.335 kb on - strand, within CCNA_03028at 3183.335 kb on - strand, within CCNA_03028at 3183.335 kb on - strand, within CCNA_03028at 3183.405 kb on + strand, within CCNA_03028at 3183.452 kb on - strand, within CCNA_03028at 3183.454 kb on - strand, within CCNA_03028at 3183.490 kb on - strand, within CCNA_03028at 3183.516 kb on - strand, within CCNA_03028at 3183.516 kb on - strand, within CCNA_03028at 3183.542 kb on - strand, within CCNA_03028at 3183.543 kb on - strand, within CCNA_03028at 3183.547 kb on + strand, within CCNA_03028at 3183.547 kb on + strand, within CCNA_03028at 3183.554 kb on + strand, within CCNA_03028at 3183.555 kb on - strand, within CCNA_03028at 3183.555 kb on - strand, within CCNA_03028at 3183.555 kb on - strand, within CCNA_03028at 3183.583 kb on - strand, within CCNA_03028at 3183.648 kb on + strand, within CCNA_03028at 3183.656 kb on - strand, within CCNA_03028at 3183.657 kb on + strand, within CCNA_03028at 3183.665 kb on - strand, within CCNA_03028at 3183.665 kb on - strand, within CCNA_03028at 3183.665 kb on - strand, within CCNA_03028at 3183.665 kb on - strand, within CCNA_03028at 3183.665 kb on - strand, within CCNA_03028at 3183.674 kb on - strand, within CCNA_03028at 3183.830 kb on - strand, within CCNA_03028at 3183.831 kb on - strand, within CCNA_03028at 3183.838 kb on + strand, within CCNA_03028at 3183.838 kb on - strand, within CCNA_03028at 3183.850 kb on + strand, within CCNA_03028at 3183.850 kb on + strand, within CCNA_03028at 3183.850 kb on + strand, within CCNA_03028at 3183.858 kb on - strand, within CCNA_03028at 3183.858 kb on - strand, within CCNA_03028at 3183.874 kb on - strand, within CCNA_03028at 3183.912 kb on - strandat 3183.912 kb on - strandat 3183.953 kb on - strandat 3183.964 kb on + strandat 3183.967 kb on - strandat 3184.688 kb on + strandat 3184.706 kb on - strandat 3184.706 kb on - strandat 3184.728 kb on + strandat 3184.770 kb on + strandat 3184.770 kb on + strandat 3184.780 kb on - strandat 3184.802 kb on + strandat 3184.802 kb on + strandat 3184.802 kb on + strandat 3184.815 kb on + strandat 3184.869 kb on + strandat 3184.886 kb on + strandat 3184.929 kb on + strand, within CCNA_03030

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin (C)
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3,182,113 - CCNA_03027 0.35 -0.0
3,182,113 - CCNA_03027 0.35 -1.2
3,182,147 + CCNA_03027 0.38 -0.8
3,182,155 - CCNA_03027 0.38 -0.2
3,182,167 - CCNA_03027 0.39 +0.4
3,182,174 - CCNA_03027 0.40 -2.3
3,182,189 - CCNA_03027 0.41 -0.6
3,182,225 - CCNA_03027 0.43 -0.3
3,182,272 + CCNA_03027 0.47 +0.3
3,182,317 + CCNA_03027 0.50 -1.0
3,182,317 + CCNA_03027 0.50 -0.9
3,182,317 + CCNA_03027 0.50 -1.7
3,182,317 + CCNA_03027 0.50 -0.9
3,182,325 - CCNA_03027 0.51 -0.5
3,182,325 - CCNA_03027 0.51 -0.7
3,182,352 + CCNA_03027 0.53 -0.8
3,182,377 + CCNA_03027 0.55 +0.4
3,182,382 + CCNA_03027 0.55 -0.0
3,182,385 - CCNA_03027 0.55 -0.8
3,182,385 - CCNA_03027 0.55 -0.7
3,182,393 + CCNA_03027 0.56 -1.5
3,182,393 + CCNA_03027 0.56 +2.0
3,182,393 + CCNA_03027 0.56 -1.1
3,182,393 + CCNA_03027 0.56 -0.9
3,182,393 + CCNA_03027 0.56 -0.4
3,182,401 - CCNA_03027 0.57 -1.8
3,182,401 - CCNA_03027 0.57 -0.3
3,182,401 - CCNA_03027 0.57 -1.3
3,182,401 - CCNA_03027 0.57 -2.0
3,182,401 - CCNA_03027 0.57 -2.0
3,182,401 - CCNA_03027 0.57 -1.8
3,182,401 - CCNA_03027 0.57 -0.4
3,182,401 - CCNA_03027 0.57 +1.7
3,182,410 + CCNA_03027 0.57 -2.4
3,182,410 + CCNA_03027 0.57 -0.5
3,182,418 - CCNA_03027 0.58 -0.8
3,182,418 - CCNA_03027 0.58 -1.9
3,182,418 - CCNA_03027 0.58 -0.5
3,182,418 - CCNA_03027 0.58 -0.9
3,182,451 - CCNA_03027 0.60 -1.6
3,182,460 + CCNA_03027 0.61 -1.1
3,182,509 - CCNA_03027 0.65 -0.9
3,182,511 - CCNA_03027 0.65 +0.8
3,182,511 - CCNA_03027 0.65 +1.0
3,182,512 + CCNA_03027 0.65 +0.4
3,182,520 - CCNA_03027 0.65 -1.3
3,182,554 + CCNA_03027 0.68 -1.7
3,182,564 + CCNA_03027 0.69 -2.2
3,182,572 - CCNA_03027 0.69 -1.9
3,182,572 - CCNA_03027 0.69 -0.3
3,182,582 - CCNA_03027 0.70 -1.4
3,182,589 + CCNA_03027 0.71 -0.2
3,182,616 + +0.7
3,182,658 + CCNA_03027 0.76 -2.1
3,182,667 - CCNA_03027 0.76 -0.6
3,182,714 - CCNA_03027 0.80 -1.6
3,182,738 + CCNA_03027 0.82 -2.4
3,182,756 + CCNA_03027 0.83 -1.9
3,182,761 + CCNA_03027 0.83 -3.7
3,182,813 - CCNA_03027 0.87 +0.3
3,182,817 + CCNA_03027 0.88 -2.4
3,182,825 - CCNA_03027 0.88 -1.0
3,182,867 - +0.3
3,182,872 + -1.9
3,182,873 + -1.7
3,182,881 - +0.6
3,182,926 + -1.7
3,182,929 - -2.3
3,182,941 + -0.5
3,182,944 - +1.7
3,182,949 - -0.0
3,182,949 - -1.9
3,182,949 - -0.9
3,182,964 + +1.1
3,182,972 - +0.1
3,183,013 + +0.3
3,183,024 + +0.6
3,183,032 + +1.0
3,183,102 + -0.3
3,183,110 - +2.0
3,183,110 - +1.3
3,183,115 - +3.3
3,183,115 - +2.0
3,183,141 - +1.4
3,183,154 + -2.4
3,183,187 - -0.7
3,183,196 - CCNA_03028 0.10 -1.6
3,183,214 + CCNA_03028 0.12 +0.2
3,183,214 - CCNA_03028 0.12 -1.7
3,183,232 - CCNA_03028 0.14 -2.5
3,183,232 - CCNA_03028 0.14 -3.8
3,183,237 + CCNA_03028 0.15 -1.5
3,183,313 - CCNA_03028 0.24 -1.5
3,183,327 + CCNA_03028 0.25 -0.2
3,183,327 + CCNA_03028 0.25 -1.5
3,183,327 + CCNA_03028 0.25 +0.7
3,183,327 + CCNA_03028 0.25 +0.2
3,183,327 + CCNA_03028 0.25 -2.4
3,183,335 - CCNA_03028 0.26 -1.4
3,183,335 - CCNA_03028 0.26 -2.5
3,183,335 - CCNA_03028 0.26 -1.2
3,183,335 - CCNA_03028 0.26 +0.7
3,183,335 - CCNA_03028 0.26 -1.9
3,183,335 - CCNA_03028 0.26 -3.1
3,183,335 - CCNA_03028 0.26 -3.3
3,183,405 + CCNA_03028 0.35 -1.5
3,183,452 - CCNA_03028 0.40 -1.2
3,183,454 - CCNA_03028 0.40 -1.9
3,183,490 - CCNA_03028 0.45 -0.7
3,183,516 - CCNA_03028 0.48 -0.0
3,183,516 - CCNA_03028 0.48 -4.3
3,183,542 - CCNA_03028 0.51 -3.5
3,183,543 - CCNA_03028 0.51 -0.2
3,183,547 + CCNA_03028 0.51 -1.1
3,183,547 + CCNA_03028 0.51 -1.9
3,183,554 + CCNA_03028 0.52 -1.7
3,183,555 - CCNA_03028 0.52 -2.8
3,183,555 - CCNA_03028 0.52 -2.4
3,183,555 - CCNA_03028 0.52 -2.6
3,183,583 - CCNA_03028 0.56 -2.0
3,183,648 + CCNA_03028 0.63 -2.2
3,183,656 - CCNA_03028 0.64 -0.6
3,183,657 + CCNA_03028 0.64 -1.5
3,183,665 - CCNA_03028 0.65 -1.5
3,183,665 - CCNA_03028 0.65 -0.9
3,183,665 - CCNA_03028 0.65 -3.2
3,183,665 - CCNA_03028 0.65 -1.8
3,183,665 - CCNA_03028 0.65 -0.7
3,183,674 - CCNA_03028 0.66 -3.0
3,183,830 - CCNA_03028 0.85 -4.0
3,183,831 - CCNA_03028 0.85 -1.2
3,183,838 + CCNA_03028 0.85 -3.1
3,183,838 - CCNA_03028 0.85 -1.5
3,183,850 + CCNA_03028 0.87 +1.0
3,183,850 + CCNA_03028 0.87 +0.2
3,183,850 + CCNA_03028 0.87 -2.8
3,183,858 - CCNA_03028 0.88 -0.3
3,183,858 - CCNA_03028 0.88 -2.3
3,183,874 - CCNA_03028 0.90 -2.4
3,183,912 - +1.0
3,183,912 - -3.5
3,183,953 - -0.6
3,183,964 + -2.2
3,183,967 - +1.2
3,184,688 + +0.2
3,184,706 - +0.7
3,184,706 - -0.4
3,184,728 + +2.0
3,184,770 + +2.8
3,184,770 + +4.4
3,184,780 - +0.2
3,184,802 + +2.2
3,184,802 + +2.2
3,184,802 + +1.5
3,184,815 + +2.1
3,184,869 + +2.5
3,184,886 + +2.4
3,184,929 + CCNA_03030 0.11 +2.1

Or see this region's nucleotide sequence