Experiment: a-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01957 and CCNA_01958 are separated by 144 nucleotides CCNA_01958 and CCNA_01959 are separated by 78 nucleotides CCNA_01959 and CCNA_01960 are separated by 60 nucleotides CCNA_01960 and CCNA_01961 are separated by 5 nucleotides
CCNA_01957: CCNA_01957 - thiazole biosynthesis protein ThiG, at 2,102,616 to 2,103,425
_01957
CCNA_01958: CCNA_01958 - ThiaminS ubiquitin-like sulfur carrier protein ThiS, at 2,103,570 to 2,103,770
_01958
CCNA_01959: CCNA_01959 - 3-dehydroquinate dehydratase, at 2,103,849 to 2,104,289
_01959
CCNA_01960: CCNA_01960 - acetyl-CoA carboxylase biotin carboxyl carrier protein subunit, at 2,104,350 to 2,104,862
_01960
CCNA_01961: CCNA_01961 - biotin carboxylase, at 2,104,868 to 2,106,214
_01961
Position (kb)
2103
2104
2105 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2103.440 kb on - strand at 2103.496 kb on + strand at 2103.496 kb on + strand at 2103.504 kb on - strand at 2103.514 kb on + strand at 2103.537 kb on - strand at 2103.550 kb on + strand at 2103.568 kb on + strand at 2103.776 kb on - strand at 2103.793 kb on - strand at 2103.816 kb on + strand at 2103.816 kb on + strand at 2103.953 kb on + strand, within CCNA_01959 at 2104.139 kb on + strand, within CCNA_01959 at 2104.149 kb on + strand, within CCNA_01959 at 2104.154 kb on + strand, within CCNA_01959 at 2104.154 kb on + strand, within CCNA_01959 at 2104.221 kb on + strand, within CCNA_01959 at 2104.267 kb on + strand at 2104.293 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin (C) remove 2,103,440 - +1.4 2,103,496 + -0.4 2,103,496 + -1.6 2,103,504 - +3.1 2,103,514 + -1.4 2,103,537 - +0.9 2,103,550 + -0.3 2,103,568 + +1.8 2,103,776 - +0.5 2,103,793 - -0.0 2,103,816 + +0.2 2,103,816 + +1.5 2,103,953 + CCNA_01959 0.24 -1.5 2,104,139 + CCNA_01959 0.66 -2.1 2,104,149 + CCNA_01959 0.68 -1.9 2,104,154 + CCNA_01959 0.69 -0.8 2,104,154 + CCNA_01959 0.69 -2.2 2,104,221 + CCNA_01959 0.84 -1.0 2,104,267 + -2.0 2,104,293 + +1.0
Or see this region's nucleotide sequence