Experiment: a-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01941 and CCNA_01942 overlap by 4 nucleotides CCNA_01942 and CCNA_01943 are separated by 178 nucleotides CCNA_01943 and CCNA_01944 are separated by 66 nucleotides
CCNA_01941: CCNA_01941 - cysteine desulfhydrase/Selenocysteine lyase, at 2,083,785 to 2,084,924
_01941
CCNA_01942: CCNA_01942 - Rrf2 family protein, at 2,084,921 to 2,085,397
_01942
CCNA_01943: CCNA_01943 - alpha/beta hydrolase family protein, at 2,085,576 to 2,086,226
_01943
CCNA_01944: CCNA_01944 - McrA-family restriction endonuclease, at 2,086,293 to 2,086,811
_01944
Position (kb)
2084
2085
2086 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2084.925 kb on - strand at 2084.994 kb on - strand, within CCNA_01942 at 2084.997 kb on + strand, within CCNA_01942 at 2085.057 kb on + strand, within CCNA_01942 at 2085.072 kb on + strand, within CCNA_01942 at 2085.080 kb on - strand, within CCNA_01942 at 2085.092 kb on + strand, within CCNA_01942 at 2085.100 kb on - strand, within CCNA_01942 at 2085.101 kb on - strand, within CCNA_01942 at 2085.101 kb on - strand, within CCNA_01942 at 2085.101 kb on - strand, within CCNA_01942 at 2085.101 kb on - strand, within CCNA_01942 at 2085.167 kb on + strand, within CCNA_01942 at 2085.175 kb on - strand, within CCNA_01942 at 2085.182 kb on - strand, within CCNA_01942 at 2085.232 kb on - strand, within CCNA_01942 at 2085.273 kb on + strand, within CCNA_01942 at 2085.335 kb on - strand, within CCNA_01942 at 2085.339 kb on + strand, within CCNA_01942 at 2085.400 kb on + strand at 2085.400 kb on + strand at 2085.400 kb on + strand at 2085.400 kb on + strand at 2085.400 kb on + strand at 2085.400 kb on + strand at 2085.400 kb on + strand at 2085.400 kb on + strand at 2085.400 kb on + strand at 2085.400 kb on + strand at 2085.407 kb on - strand at 2085.408 kb on - strand at 2085.408 kb on - strand at 2085.408 kb on - strand at 2085.408 kb on - strand at 2085.408 kb on - strand at 2085.408 kb on - strand at 2085.408 kb on - strand at 2085.408 kb on - strand at 2085.408 kb on - strand at 2085.408 kb on - strand at 2085.408 kb on - strand at 2085.408 kb on - strand at 2085.408 kb on - strand at 2085.408 kb on - strand at 2085.408 kb on - strand at 2085.451 kb on - strand at 2086.025 kb on + strand, within CCNA_01943 at 2086.234 kb on + strand at 2086.242 kb on - strand at 2086.244 kb on + strand at 2086.244 kb on + strand at 2086.244 kb on + strand at 2086.252 kb on - strand at 2086.256 kb on + strand at 2086.291 kb on + strand at 2086.299 kb on - strand at 2086.299 kb on - strand at 2086.346 kb on - strand, within CCNA_01944 at 2086.361 kb on - strand, within CCNA_01944
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin (C) remove 2,084,925 - +2.4 2,084,994 - CCNA_01942 0.15 -0.0 2,084,997 + CCNA_01942 0.16 +0.0 2,085,057 + CCNA_01942 0.29 -0.8 2,085,072 + CCNA_01942 0.32 +3.6 2,085,080 - CCNA_01942 0.33 +2.2 2,085,092 + CCNA_01942 0.36 -0.8 2,085,100 - CCNA_01942 0.38 +2.7 2,085,101 - CCNA_01942 0.38 +3.1 2,085,101 - CCNA_01942 0.38 +3.5 2,085,101 - CCNA_01942 0.38 +3.3 2,085,101 - CCNA_01942 0.38 +3.0 2,085,167 + CCNA_01942 0.52 +1.8 2,085,175 - CCNA_01942 0.53 +2.3 2,085,182 - CCNA_01942 0.55 +2.2 2,085,232 - CCNA_01942 0.65 +3.5 2,085,273 + CCNA_01942 0.74 +1.0 2,085,335 - CCNA_01942 0.87 +2.7 2,085,339 + CCNA_01942 0.88 +0.4 2,085,400 + +0.7 2,085,400 + +1.6 2,085,400 + +0.4 2,085,400 + -0.6 2,085,400 + +1.9 2,085,400 + -0.3 2,085,400 + +0.9 2,085,400 + -2.0 2,085,400 + +2.4 2,085,400 + +0.4 2,085,407 - +1.5 2,085,408 - +0.9 2,085,408 - +0.7 2,085,408 - +0.8 2,085,408 - +1.0 2,085,408 - -1.0 2,085,408 - -0.6 2,085,408 - -0.1 2,085,408 - +1.1 2,085,408 - +1.2 2,085,408 - +2.7 2,085,408 - +1.0 2,085,408 - +1.5 2,085,408 - -0.7 2,085,408 - +0.2 2,085,408 - +1.3 2,085,451 - +3.1 2,086,025 + CCNA_01943 0.69 -0.8 2,086,234 + +2.7 2,086,242 - +1.2 2,086,244 + +2.9 2,086,244 + +2.2 2,086,244 + +2.7 2,086,252 - -0.3 2,086,256 + +1.9 2,086,291 + -1.6 2,086,299 - +1.2 2,086,299 - +1.8 2,086,346 - CCNA_01944 0.10 +0.8 2,086,361 - CCNA_01944 0.13 -0.2
Or see this region's nucleotide sequence