Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01936

Experiment: a-Cyclodextrin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01933 and CCNA_01934 overlap by 1 nucleotidesCCNA_01934 and CCNA_01935 are separated by 5 nucleotidesCCNA_01935 and CCNA_01936 are separated by 7 nucleotidesCCNA_01936 and CCNA_01937 overlap by 1 nucleotides CCNA_01933: CCNA_01933 - hypothetical protein, at 2,077,966 to 2,078,166 _01933 CCNA_01934: CCNA_01934 - HesB protein family, at 2,078,166 to 2,078,567 _01934 CCNA_01935: CCNA_01935 - FeS assembly SUF system protein, at 2,078,573 to 2,078,929 _01935 CCNA_01936: CCNA_01936 - cysteine desulfurase/selenocysteine lyase, at 2,078,937 to 2,080,163 _01936 CCNA_01937: CCNA_01937 - FeS assembly protein SufD, at 2,080,163 to 2,081,191 _01937 Position (kb) 2078 2079 2080 2081Strain fitness (log2 ratio) -1 0 1 2at 2077.950 kb on + strandat 2077.984 kb on - strandat 2078.056 kb on + strand, within CCNA_01933at 2078.062 kb on - strand, within CCNA_01933at 2078.083 kb on - strand, within CCNA_01933at 2078.103 kb on - strand, within CCNA_01933at 2078.110 kb on - strand, within CCNA_01933at 2078.122 kb on + strand, within CCNA_01933at 2078.128 kb on - strand, within CCNA_01933at 2078.128 kb on - strand, within CCNA_01933at 2078.138 kb on - strand, within CCNA_01933at 2078.169 kb on + strandat 2078.172 kb on - strandat 2078.288 kb on - strand, within CCNA_01934at 2078.441 kb on - strand, within CCNA_01934at 2078.512 kb on + strand, within CCNA_01934at 2078.569 kb on - strandat 2078.569 kb on - strandat 2080.149 kb on - strandat 2081.099 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin (C)
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2,077,950 + -1.5
2,077,984 - +2.6
2,078,056 + CCNA_01933 0.45 -0.2
2,078,062 - CCNA_01933 0.48 +1.6
2,078,083 - CCNA_01933 0.58 +1.4
2,078,103 - CCNA_01933 0.68 +1.7
2,078,110 - CCNA_01933 0.72 +1.9
2,078,122 + CCNA_01933 0.78 -1.2
2,078,128 - CCNA_01933 0.81 +0.8
2,078,128 - CCNA_01933 0.81 +0.4
2,078,138 - CCNA_01933 0.86 +1.9
2,078,169 + -1.1
2,078,172 - +0.7
2,078,288 - CCNA_01934 0.30 +0.8
2,078,441 - CCNA_01934 0.68 +0.0
2,078,512 + CCNA_01934 0.86 +0.4
2,078,569 - +1.6
2,078,569 - +0.6
2,080,149 - +1.1
2,081,099 - +1.5

Or see this region's nucleotide sequence