Experiment: a-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01933 and CCNA_01934 overlap by 1 nucleotides CCNA_01934 and CCNA_01935 are separated by 5 nucleotides CCNA_01935 and CCNA_01936 are separated by 7 nucleotides CCNA_01936 and CCNA_01937 overlap by 1 nucleotides
CCNA_01933: CCNA_01933 - hypothetical protein, at 2,077,966 to 2,078,166
_01933
CCNA_01934: CCNA_01934 - HesB protein family, at 2,078,166 to 2,078,567
_01934
CCNA_01935: CCNA_01935 - FeS assembly SUF system protein, at 2,078,573 to 2,078,929
_01935
CCNA_01936: CCNA_01936 - cysteine desulfurase/selenocysteine lyase, at 2,078,937 to 2,080,163
_01936
CCNA_01937: CCNA_01937 - FeS assembly protein SufD, at 2,080,163 to 2,081,191
_01937
Position (kb)
2078
2079
2080
2081 Strain fitness (log2 ratio)
-1
0
1
2 at 2077.950 kb on + strand at 2077.984 kb on - strand at 2078.056 kb on + strand, within CCNA_01933 at 2078.062 kb on - strand, within CCNA_01933 at 2078.083 kb on - strand, within CCNA_01933 at 2078.103 kb on - strand, within CCNA_01933 at 2078.110 kb on - strand, within CCNA_01933 at 2078.122 kb on + strand, within CCNA_01933 at 2078.128 kb on - strand, within CCNA_01933 at 2078.128 kb on - strand, within CCNA_01933 at 2078.138 kb on - strand, within CCNA_01933 at 2078.169 kb on + strand at 2078.172 kb on - strand at 2078.288 kb on - strand, within CCNA_01934 at 2078.441 kb on - strand, within CCNA_01934 at 2078.512 kb on + strand, within CCNA_01934 at 2078.569 kb on - strand at 2078.569 kb on - strand at 2080.149 kb on - strand at 2081.099 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin (C) remove 2,077,950 + -1.5 2,077,984 - +2.6 2,078,056 + CCNA_01933 0.45 -0.2 2,078,062 - CCNA_01933 0.48 +1.6 2,078,083 - CCNA_01933 0.58 +1.4 2,078,103 - CCNA_01933 0.68 +1.7 2,078,110 - CCNA_01933 0.72 +1.9 2,078,122 + CCNA_01933 0.78 -1.2 2,078,128 - CCNA_01933 0.81 +0.8 2,078,128 - CCNA_01933 0.81 +0.4 2,078,138 - CCNA_01933 0.86 +1.9 2,078,169 + -1.1 2,078,172 - +0.7 2,078,288 - CCNA_01934 0.30 +0.8 2,078,441 - CCNA_01934 0.68 +0.0 2,078,512 + CCNA_01934 0.86 +0.4 2,078,569 - +1.6 2,078,569 - +0.6 2,080,149 - +1.1 2,081,099 - +1.5
Or see this region's nucleotide sequence