Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01830

Experiment: a-Cyclodextrin (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Cyclodextrin (C)
1,955,691	+		CCNA_01829	0.19	+0.9
1,955,699	-		CCNA_01829	0.20	+0.1
1,955,763	+		CCNA_01829	0.26	+1.9
1,955,791	-		CCNA_01829	0.28	-0.7
1,955,806	-		CCNA_01829	0.30	-0.1
1,955,867	-		CCNA_01829	0.36	+1.3
1,955,874	+		CCNA_01829	0.36	+3.6
1,955,874	+		CCNA_01829	0.36	+2.1
1,955,882	-		CCNA_01829	0.37	-1.1
1,955,882	-		CCNA_01829	0.37	+1.3
1,955,882	-		CCNA_01829	0.37	+3.1
1,955,883	-		CCNA_01829	0.37	-0.3
1,955,915	+		CCNA_01829	0.40	+2.6
1,955,944	-		CCNA_01829	0.43	-1.6
1,956,092	+		CCNA_01829	0.57	+1.6
1,956,092	+		CCNA_01829	0.57	+1.4
1,956,092	+		CCNA_01829	0.57	-0.2
1,956,092	+		CCNA_01829	0.57	+1.3
1,956,100	-		CCNA_01829	0.58	+1.0
1,956,144	+		CCNA_01829	0.62	+2.7
1,956,145	+		CCNA_01829	0.62	+2.0
1,956,145	+		CCNA_01829	0.62	+1.1
1,956,163	+		CCNA_01829	0.64	+0.4
1,956,163	+		CCNA_01829	0.64	+2.2
1,956,163	+		CCNA_01829	0.64	+1.3
1,956,163	-		CCNA_01829	0.64	+0.5
1,956,171	-		CCNA_01829	0.65	+0.7
1,956,219	+		CCNA_01829	0.69	+1.2
1,956,219	+		CCNA_01829	0.69	+1.0
1,956,227	-		CCNA_01829	0.70	-1.5
1,956,246	+		CCNA_01829	0.72	-0.5
1,956,276	-		CCNA_01829	0.75	-0.5
1,956,308	+		CCNA_01829	0.78	+0.0
1,956,339	+		CCNA_01829	0.81	-1.0
1,956,340	-		CCNA_01829	0.81	+1.2
1,956,380	+		CCNA_01829	0.85	-0.6
1,956,391	-		CCNA_01829	0.86	+0.3
1,956,408	+		CCNA_01829	0.87	-2.6
1,956,533	+				+0.2
1,956,533	+				+2.0
1,956,533	+				-0.3
1,956,533	+				+1.0
1,956,534	+				-0.8
1,956,536	-				+0.4
1,956,541	-				+0.8
1,956,541	-				+0.8
1,956,541	-				+0.3
1,956,541	-				-1.1
1,956,610	+				+0.7
1,956,662	-				-1.4
1,956,662	-				-0.2
1,956,739	-				+2.0
1,956,758	-				-1.3
1,956,758	-				-2.7
1,956,758	-				-0.4
1,956,762	-				-0.6
1,956,768	-				+2.0
1,956,809	+				+0.0
1,956,832	-				-0.2
1,956,832	-				-0.1
1,956,832	-				+2.6
1,956,847	+				-2.1
1,956,901	+				-0.6
1,956,909	-				-0.5
1,956,932	-				-0.5
1,956,943	-				-2.9
1,957,047	+		CCNA_01830	0.13	+0.6
1,957,057	+		CCNA_01830	0.13	-1.5
1,957,057	+		CCNA_01830	0.13	-0.3
1,957,057	+		CCNA_01830	0.13	+0.1
1,957,057	+		CCNA_01830	0.13	-1.0
1,957,060	-		CCNA_01830	0.13	+0.5
1,957,075	+		CCNA_01830	0.14	-0.5
1,957,154	+		CCNA_01830	0.17	-0.1
1,957,168	+		CCNA_01830	0.17	+0.2
1,957,176	-		CCNA_01830	0.18	-1.3
1,957,194	+		CCNA_01830	0.18	+0.3
1,957,194	+		CCNA_01830	0.18	-1.2
1,957,194	+		CCNA_01830	0.18	-3.0
1,957,202	-		CCNA_01830	0.18	-0.4
1,957,202	-		CCNA_01830	0.18	-0.4
1,957,209	-		CCNA_01830	0.19	+0.3
1,957,209	-		CCNA_01830	0.19	-0.7
1,957,364	+		CCNA_01830	0.24	-0.1
1,957,369	+		CCNA_01830	0.24	-1.0
1,957,372	-		CCNA_01830	0.24	-1.9
1,957,377	-		CCNA_01830	0.25	+0.6
1,957,377	-		CCNA_01830	0.25	+0.2
1,957,378	-		CCNA_01830	0.25	-1.2
1,957,379	+		CCNA_01830	0.25	-0.1
1,957,408	+		CCNA_01830	0.26	-1.3
1,957,408	+		CCNA_01830	0.26	-1.5
1,957,415	+		CCNA_01830	0.26	-0.3
1,957,415	+		CCNA_01830	0.26	+1.9
1,957,415	+		CCNA_01830	0.26	-1.6
1,957,415	+		CCNA_01830	0.26	+0.6
1,957,423	-		CCNA_01830	0.26	-0.3
1,957,425	-		CCNA_01830	0.26	-1.4
1,957,478	-		CCNA_01830	0.28	+0.3
1,957,493	-		CCNA_01830	0.29	+2.5
1,957,495	+		CCNA_01830	0.29	-1.0
1,957,585	+		CCNA_01830	0.32	+0.2
1,957,585	+		CCNA_01830	0.32	-0.4
1,957,606	+		CCNA_01830	0.33	+0.0
1,957,610	-		CCNA_01830	0.33	-1.3
1,957,614	-		CCNA_01830	0.33	-0.5
1,957,625	+		CCNA_01830	0.33	-0.7
1,957,628	+		CCNA_01830	0.33	-0.8
1,957,633	-		CCNA_01830	0.34	+0.6
1,957,656	+		CCNA_01830	0.34	-0.4
1,957,693	-		CCNA_01830	0.36	+1.3
1,957,720	+		CCNA_01830	0.37	-0.5
1,957,741	+		CCNA_01830	0.37	+1.9
1,957,764	+		CCNA_01830	0.38	-1.1
1,957,787	+		CCNA_01830	0.39	+1.3
1,957,800	+		CCNA_01830	0.39	-1.8
1,957,809	-		CCNA_01830	0.40	-0.3
1,957,818	+		CCNA_01830	0.40	+0.6
1,957,826	-		CCNA_01830	0.40	-0.5
1,957,870	+		CCNA_01830	0.42	-0.3
1,957,873	-		CCNA_01830	0.42	-0.4
1,957,878	-		CCNA_01830	0.42	-2.0
1,957,879	+		CCNA_01830	0.42	-0.8
1,957,889	+		CCNA_01830	0.42	-1.0
1,957,889	+		CCNA_01830	0.42	-0.0
1,957,889	+		CCNA_01830	0.42	+0.9
1,957,889	+		CCNA_01830	0.42	+0.2
1,957,889	+		CCNA_01830	0.42	+0.9
1,957,889	+		CCNA_01830	0.42	-0.8
1,957,897	-		CCNA_01830	0.43	-0.3
1,957,967	-		CCNA_01830	0.45	-2.0
1,957,967	-		CCNA_01830	0.45	-0.7
1,957,980	+		CCNA_01830	0.46	-1.2
1,958,000	-		CCNA_01830	0.46	+2.0
1,958,008	-		CCNA_01830	0.47	-0.1
1,958,035	+		CCNA_01830	0.48	-1.4
1,958,056	-		CCNA_01830	0.48	-0.5
1,958,070	+		CCNA_01830	0.49	-0.1
1,958,092	+		CCNA_01830	0.50	-0.6
1,958,092	+		CCNA_01830	0.50	-0.8
1,958,093	-		CCNA_01830	0.50	-0.8
1,958,093	-		CCNA_01830	0.50	+0.3
1,958,100	-		CCNA_01830	0.50	-0.5
1,958,127	-		CCNA_01830	0.51	+0.3
1,958,153	+		CCNA_01830	0.52	-2.5
1,958,158	+		CCNA_01830	0.52	-0.1
1,958,161	-		CCNA_01830	0.52	-0.2
1,958,161	-		CCNA_01830	0.52	-1.2
1,958,166	-		CCNA_01830	0.52	-1.1
1,958,168	+		CCNA_01830	0.52	+2.0
1,958,171	-		CCNA_01830	0.52	-2.8
1,958,176	-		CCNA_01830	0.52	+0.0
1,958,194	+		CCNA_01830	0.53	-1.6
1,958,194	+		CCNA_01830	0.53	+0.1
1,958,194	+		CCNA_01830	0.53	-1.2
1,958,194	+		CCNA_01830	0.53	+0.1
1,958,194	+		CCNA_01830	0.53	+0.8
1,958,194	+		CCNA_01830	0.53	+0.1
1,958,202	-		CCNA_01830	0.53	+1.3
1,958,202	-		CCNA_01830	0.53	-1.4
1,958,220	-		CCNA_01830	0.54	+0.5
1,958,245	+		CCNA_01830	0.55	+0.4
1,958,282	-		CCNA_01830	0.56	-0.3
1,958,314	-		CCNA_01830	0.57	+0.6
1,958,353	-		CCNA_01830	0.59	-1.4
1,958,484	+		CCNA_01830	0.63	+0.5
1,958,502	-		CCNA_01830	0.64	-0.3
1,958,507	+		CCNA_01830	0.64	+0.6
1,958,533	-		CCNA_01830	0.65	-1.3
1,958,568	-		CCNA_01830	0.66	-0.1
1,958,590	-		CCNA_01830	0.67	-1.3
1,958,592	+		CCNA_01830	0.67	-0.4
1,958,592	+		CCNA_01830	0.67	-0.8
1,958,604	+		CCNA_01830	0.67	-0.5
1,958,604	+		CCNA_01830	0.67	-1.2
1,958,611	+		CCNA_01830	0.68	+0.2
1,958,612	-		CCNA_01830	0.68	+2.0
1,958,644	+		CCNA_01830	0.69	+0.5
1,958,644	+		CCNA_01830	0.69	-1.7
1,958,644	+		CCNA_01830	0.69	-0.5
1,958,644	+		CCNA_01830	0.69	-2.0
1,958,652	-		CCNA_01830	0.69	-0.8
1,958,713	+		CCNA_01830	0.71	-0.1
1,958,713	+		CCNA_01830	0.71	-1.6
1,958,718	+		CCNA_01830	0.71	+1.0
1,958,718	+		CCNA_01830	0.71	-1.5
1,958,728	+		CCNA_01830	0.72	+2.3
1,958,785	+		CCNA_01830	0.74	+1.3
1,958,786	-		CCNA_01830	0.74	+0.8
1,958,819	+		CCNA_01830	0.75	+0.2
1,958,893	-		CCNA_01830	0.78	-2.0
1,958,918	-		CCNA_01830	0.78	-1.0
1,959,022	+		CCNA_01830	0.82	-2.3
1,959,022	+		CCNA_01830	0.82	-0.1
1,959,030	-		CCNA_01830	0.82	+0.3
1,959,038	-		CCNA_01830	0.83	+0.5
1,959,084	-		CCNA_01830	0.84	-0.5
1,959,090	-		CCNA_01830	0.84	+0.8
1,959,100	-		CCNA_01830	0.85	-0.4
1,959,105	-		CCNA_01830	0.85	-1.5
1,959,112	+		CCNA_01830	0.85	-1.2
1,959,115	-		CCNA_01830	0.85	-1.5
1,959,117	+		CCNA_01830	0.85	-1.1
1,959,155	-		CCNA_01830	0.87	+2.3
1,959,178	+		CCNA_01830	0.87	+0.3
1,959,188	+		CCNA_01830	0.88	-0.7
1,959,188	+		CCNA_01830	0.88	+0.5
1,959,207	+		CCNA_01830	0.89	-0.6
1,959,244	+		CCNA_01830	0.90	+0.3
1,959,252	-				-0.3
1,959,280	-				-0.7
1,959,283	-				-1.2
1,959,340	+				+0.8
1,959,341	+				+0.5
1,959,368	-				-1.7
1,959,397	+				+0.9
1,959,431	+				+0.8
1,959,434	-				-0.4
1,959,448	+				+0.7
1,959,514	-				+0.0
1,959,529	+				+1.8
1,959,555	+				+1.0
1,959,558	+				+0.9
1,959,558	+				+1.6
1,959,560	+				+1.4
1,959,568	+				+1.1
1,959,581	+				+1.4
1,959,617	+				-2.0
1,959,646	-				-0.1
1,959,717	+				+1.4
1,959,717	+				+0.0
1,959,739	+				+0.6
1,959,744	+				+0.2
1,959,759	+				+0.5
1,959,762	-				-0.4
1,959,778	+				+0.1
1,959,783	+				-0.5
1,959,783	+				-1.3
1,959,783	+				+0.9
1,959,791	-				-0.2
1,959,825	-		CCNA_01831	0.11	-0.5
1,959,825	-		CCNA_01831	0.11	-0.5
1,959,834	+		CCNA_01831	0.12	+0.0
1,959,842	-		CCNA_01831	0.13	+0.6
1,959,842	-		CCNA_01831	0.13	+0.9
1,959,863	+		CCNA_01831	0.14	-1.2
1,959,863	+		CCNA_01831	0.14	+0.2
1,959,873	+		CCNA_01831	0.15	+0.2
1,959,926	+		CCNA_01831	0.18	-1.0
1,959,933	+		CCNA_01831	0.19	-1.3
1,959,941	-		CCNA_01831	0.19	-0.5
1,959,941	-		CCNA_01831	0.19	-1.3
1,959,948	+		CCNA_01831	0.20	-1.2
1,959,948	+		CCNA_01831	0.20	+0.0
1,959,953	+		CCNA_01831	0.20	-1.3
1,959,953	+		CCNA_01831	0.20	-1.0
1,959,956	-		CCNA_01831	0.20	+1.2
1,959,961	-		CCNA_01831	0.20	-1.8
1,959,980	-		CCNA_01831	0.22	+0.4
1,959,993	+		CCNA_01831	0.23	-1.3
1,959,993	+		CCNA_01831	0.23	+0.8
1,960,044	+		CCNA_01831	0.26	-1.3
1,960,112	+		CCNA_01831	0.30	+1.0
1,960,138	+		CCNA_01831	0.32	+1.3
1,960,146	-		CCNA_01831	0.33	-1.3
1,960,146	-		CCNA_01831	0.33	+0.6
1,960,161	-		CCNA_01831	0.34	-2.4
1,960,209	+		CCNA_01831	0.37	+1.2
1,960,209	+				+1.6
1,960,233	+		CCNA_01831	0.38	+0.7
1,960,241	-		CCNA_01831	0.39	+0.5
1,960,241	-		CCNA_01831	0.39	+0.1
1,960,247	+		CCNA_01831	0.39	+1.0
1,960,251	+		CCNA_01831	0.39	-1.6
1,960,260	+		CCNA_01831	0.40	+1.1
1,960,285	+				+3.0
1,960,285	+		CCNA_01831	0.42	-0.8
1,960,296	+		CCNA_01831	0.42	-1.2
1,960,391	-		CCNA_01831	0.49	+0.5
1,960,418	+		CCNA_01831	0.50	-0.2
1,960,457	-		CCNA_01831	0.53	-1.2
1,960,461	-				+2.0
1,960,469	+		CCNA_01831	0.54	+1.0
1,960,508	-		CCNA_01831	0.56	-1.9
1,960,528	+		CCNA_01831	0.58	-1.6