Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01610

Experiment: a-Cyclodextrin (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Cyclodextrin (C)
1,729,407	-		CCNA_01609	0.62	-0.6
1,729,412	-		CCNA_01609	0.63	+0.4
1,729,416	-		CCNA_01609	0.63	+0.2
1,729,444	+		CCNA_01609	0.64	+0.5
1,729,445	-		CCNA_01609	0.64	+0.7
1,729,460	+		CCNA_01609	0.65	+1.0
1,729,468	+		CCNA_01609	0.65	-1.8
1,729,476	-		CCNA_01609	0.66	+2.8
1,729,493	+		CCNA_01609	0.67	+1.8
1,729,536	+		CCNA_01609	0.69	-0.1
1,729,536	+		CCNA_01609	0.69	-0.8
1,729,536	+		CCNA_01609	0.69	+1.6
1,729,536	+		CCNA_01609	0.69	-1.6
1,729,536	+		CCNA_01609	0.69	+2.0
1,729,544	-		CCNA_01609	0.69	-1.1
1,729,544	-		CCNA_01609	0.69	-0.7
1,729,544	-		CCNA_01609	0.69	+0.3
1,729,544	-		CCNA_01609	0.69	-1.5
1,729,569	+		CCNA_01609	0.71	-0.1
1,729,573	+		CCNA_01609	0.71	+0.5
1,729,581	-		CCNA_01609	0.71	-2.5
1,729,581	-		CCNA_01609	0.71	-1.1
1,729,609	+		CCNA_01609	0.73	+1.7
1,729,609	+		CCNA_01609	0.73	+1.3
1,729,617	-		CCNA_01609	0.73	-1.1
1,729,625	+		CCNA_01609	0.74	-1.2
1,729,643	-		CCNA_01609	0.74	-2.4
1,729,643	-		CCNA_01609	0.74	+2.2
1,729,657	+		CCNA_01609	0.75	-1.1
1,729,657	+		CCNA_01609	0.75	-0.5
1,729,665	-		CCNA_01609	0.76	+0.9
1,729,666	-		CCNA_01609	0.76	-0.2
1,729,711	-		CCNA_01609	0.78	-0.2
1,729,712	-		CCNA_01609	0.78	-3.2
1,729,718	-		CCNA_01609	0.78	-0.6
1,729,773	+		CCNA_01609	0.81	-0.6
1,729,804	+		CCNA_01609	0.83	-0.0
1,729,813	+		CCNA_01609	0.83	-0.1
1,729,855	+		CCNA_01609	0.85	-1.6
1,729,865	-		CCNA_01609	0.86	+1.4
1,729,911	-		CCNA_01609	0.88	+1.9
1,729,938	-		CCNA_01609	0.90	-1.0
1,729,957	-				+0.4
1,730,034	+				-1.1
1,730,052	+				-0.8
1,730,052	+				-0.0
1,730,059	-				-1.5
1,730,275	+		CCNA_03955	0.61	-0.9
1,730,327	+				-0.5
1,730,335	-				-1.6
1,730,353	+				+2.1
1,730,357	+				-1.0
1,730,357	+				-0.8
1,730,371	-				-2.6
1,730,381	+				-0.3
1,730,381	+				-1.8
1,730,388	+				-0.1
1,730,396	-				+1.9
1,730,504	-				-2.8
1,730,524	+				-1.6
1,730,575	+		CCNA_01610	0.12	+0.4
1,730,575	+		CCNA_01610	0.12	-0.9
1,730,575	+		CCNA_01610	0.12	-1.9
1,730,575	+		CCNA_01610	0.12	-0.0
1,730,583	-		CCNA_01610	0.13	-1.3
1,730,583	-		CCNA_01610	0.13	+0.4
1,730,583	-		CCNA_01610	0.13	-0.8
1,730,583	-		CCNA_01610	0.13	-1.1
1,730,617	-		CCNA_01610	0.15	-0.5
1,730,721	+		CCNA_01610	0.21	-1.0
1,730,721	+		CCNA_01610	0.21	-0.2
1,730,721	+		CCNA_01610	0.21	-1.0
1,730,740	-		CCNA_01610	0.23	-3.0
1,730,745	-		CCNA_01610	0.23	-1.5
1,730,752	-		CCNA_01610	0.23	-1.3
1,730,799	+		CCNA_01610	0.26	+0.8
1,730,799	+		CCNA_01610	0.26	-2.0
1,730,799	+		CCNA_01610	0.26	-2.5
1,730,799	+		CCNA_01610	0.26	-1.1
1,730,807	-		CCNA_01610	0.27	-2.0
1,730,807	-		CCNA_01610	0.27	-2.9
1,730,807	-		CCNA_01610	0.27	+0.5
1,730,827	-		CCNA_01610	0.28	-0.9
1,730,907	+		CCNA_01610	0.33	-0.8
1,730,917	+				+2.5
1,730,925	+		CCNA_01610	0.34	-2.1
1,730,948	+		CCNA_01610	0.36	-2.0
1,730,951	-		CCNA_01610	0.36	+0.1
1,730,967	-		CCNA_01610	0.37	-2.0
1,731,037	-		CCNA_01610	0.41	+0.5
1,731,155	-		CCNA_01610	0.49	+0.3
1,731,155	-		CCNA_01610	0.49	-0.6
1,731,176	-		CCNA_01610	0.50	+0.0
1,731,193	+		CCNA_01610	0.51	-1.3
1,731,246	+		CCNA_01610	0.55	-0.9
1,731,259	+		CCNA_01610	0.56	-1.1
1,731,301	-		CCNA_01610	0.58	+0.3
1,731,349	-		CCNA_01610	0.61	-1.3
1,731,379	-		CCNA_01610	0.63	-0.4
1,731,386	+		CCNA_01610	0.64	-1.4
1,731,391	+		CCNA_01610	0.64	-1.0
1,731,421	-		CCNA_01610	0.66	-1.9
1,731,433	+		CCNA_01610	0.67	+1.1
1,731,440	+		CCNA_01610	0.67	-2.7
1,731,441	-		CCNA_01610	0.67	+0.9
1,731,441	-		CCNA_01610	0.67	+0.0
1,731,447	+		CCNA_01610	0.67	-0.2
1,731,447	+		CCNA_01610	0.67	+0.5
1,731,453	+		CCNA_01610	0.68	-0.4
1,731,467	+		CCNA_01610	0.69	-2.0
1,731,467	+		CCNA_01610	0.69	-3.0
1,731,473	+		CCNA_01610	0.69	-1.7
1,731,475	-		CCNA_01610	0.69	-0.9
1,731,480	+		CCNA_01610	0.70	-3.8
1,731,498	-		CCNA_01610	0.71	-0.9
1,731,519	-		CCNA_01610	0.72	-0.9
1,731,555	-		CCNA_01610	0.74	-1.8
1,731,555	-		CCNA_01610	0.74	-1.8
1,731,557	+		CCNA_01610	0.74	-1.9
1,731,703	+		CCNA_01610	0.84	+0.1
1,731,703	+		CCNA_01610	0.84	-3.4
1,731,703	+		CCNA_01610	0.84	-0.1
1,731,703	+		CCNA_01610	0.84	-0.4
1,731,703	+		CCNA_01610	0.84	-1.2
1,731,703	+		CCNA_01610	0.84	-1.0
1,731,703	+		CCNA_01610	0.84	-1.4
1,731,703	+		CCNA_01610	0.84	-0.9
1,731,711	-		CCNA_01610	0.84	-1.0
1,731,711	-		CCNA_01610	0.84	-2.5
1,731,711	-		CCNA_01610	0.84	-1.6
1,731,711	-		CCNA_01610	0.84	-0.3
1,731,715	+		CCNA_01610	0.85	+0.4
1,731,723	-		CCNA_01610	0.85	+0.9
1,731,725	+		CCNA_01610	0.85	+1.1
1,731,748	-		CCNA_01610	0.87	-2.1
1,731,750	+		CCNA_01610	0.87	-2.3
1,731,758	-		CCNA_01610	0.87	+0.9
1,731,790	+		CCNA_01610	0.89	+1.0
1,731,790	+		CCNA_01610	0.89	+1.1
1,731,790	+		CCNA_01610	0.89	-0.7
1,731,791	+		CCNA_01610	0.89	-1.2
1,731,798	-		CCNA_01610	0.90	-2.7
1,731,807	+				-0.4
1,731,815	-				-0.2
1,731,860	-				-0.6
1,731,871	+				-0.3
1,731,872	+				-0.7
1,731,880	-				-1.0
1,731,880	-				-2.6
1,731,880	-				-1.0
1,731,880	-				+0.0
1,731,885	-				+0.8
1,731,885	-				-2.9
1,731,895	+				+0.6
1,731,917	+				+1.1
1,731,917	+				+2.1
1,731,917	+				-0.1
1,731,917	+				-0.3
1,731,925	-				-1.1
1,731,935	-				-0.7
1,731,936	-				+0.1
1,731,967	-				+1.0
1,731,984	+				-1.2
1,731,984	+				+0.6
1,731,984	+				-0.3
1,731,984	+				+0.9
1,731,984	+				-0.8
1,731,984	+				+1.4
1,731,992	-				+2.5
1,731,992	-				+2.0
1,731,996	+				+1.2
1,731,997	-				+3.7
1,732,014	+				-1.2
1,732,041	+				-0.6
1,732,049	-				-0.2
1,732,061	-				+1.0
1,732,073	+				-0.4
1,732,147	+				+1.9
1,732,220	+		CCNA_01611	0.15	+1.3
1,732,225	+		CCNA_01611	0.16	+1.8
1,732,232	+		CCNA_01611	0.17	-0.8
1,732,255	+		CCNA_01611	0.19	+0.0
1,732,278	-		CCNA_01611	0.22	+0.0
1,732,339	+		CCNA_01611	0.29	+1.5
1,732,339	+		CCNA_01611	0.29	-0.8
1,732,339	+		CCNA_01611	0.29	-0.8
1,732,339	+		CCNA_01611	0.29	-1.1
1,732,346	+		CCNA_01611	0.30	+2.2
1,732,346	+				+2.5
1,732,346	+		CCNA_01611	0.30	+2.0
1,732,347	-		CCNA_01611	0.30	+1.4
1,732,347	-		CCNA_01611	0.30	-1.8
1,732,347	-		CCNA_01611	0.30	-2.1
1,732,347	-		CCNA_01611	0.30	-1.4
1,732,347	-		CCNA_01611	0.30	-1.0
1,732,347	-		CCNA_01611	0.30	-1.7
1,732,347	-		CCNA_01611	0.30	-0.2
1,732,357	-		CCNA_01611	0.31	-2.0
1,732,372	+		CCNA_01611	0.33	+0.8
1,732,372	+		CCNA_01611	0.33	-1.4
1,732,372	+		CCNA_01611	0.33	-0.8
1,732,372	+		CCNA_01611	0.33	-0.2
1,732,380	-		CCNA_01611	0.34	-1.2
1,732,380	-		CCNA_01611	0.34	-0.4
1,732,380	-		CCNA_01611	0.34	-0.7
1,732,411	+		CCNA_01611	0.37	-1.5
1,732,411	+		CCNA_01611	0.37	-1.3
1,732,411	+		CCNA_01611	0.37	-0.4
1,732,411	+		CCNA_01611	0.37	-0.9
1,732,411	+		CCNA_01611	0.37	-0.5
1,732,411	+		CCNA_01611	0.37	-2.2
1,732,411	+		CCNA_01611	0.37	-2.6
1,732,411	+		CCNA_01611	0.37	-0.5
1,732,411	+		CCNA_01611	0.37	-0.5
1,732,411	+		CCNA_01611	0.37	-1.7
1,732,419	-		CCNA_01611	0.38	+1.2
1,732,419	-		CCNA_01611	0.38	+0.7
1,732,419	-		CCNA_01611	0.38	-0.1
1,732,419	-		CCNA_01611	0.38	+0.0
1,732,419	-		CCNA_01611	0.38	+0.9
1,732,419	-		CCNA_01611	0.38	-0.3
1,732,421	+		CCNA_01611	0.38	-1.4
1,732,426	+		CCNA_01611	0.39	-1.9
1,732,453	+		CCNA_01611	0.42	-0.3
1,732,461	-		CCNA_01611	0.43	+0.7
1,732,461	-		CCNA_01611	0.43	-1.4
1,732,478	+		CCNA_01611	0.45	+0.0
1,732,478	+		CCNA_01611	0.45	-1.0
1,732,478	+		CCNA_01611	0.45	-0.8
1,732,486	-		CCNA_01611	0.46	-1.9
1,732,486	-		CCNA_01611	0.46	-2.6
1,732,493	+		CCNA_01611	0.46	+2.8
1,732,493	+		CCNA_01611	0.46	+2.5
1,732,493	+		CCNA_01611	0.46	+3.9
1,732,493	+		CCNA_01611	0.46	+2.3
1,732,501	-		CCNA_01611	0.47	-0.3
1,732,501	-		CCNA_01611	0.47	-0.7
1,732,501	-		CCNA_01611	0.47	-0.4
1,732,501	-		CCNA_01611	0.47	-1.9
1,732,532	+		CCNA_01611	0.51	-2.3
1,732,608	+		CCNA_01611	0.59	+0.3
1,732,639	-		CCNA_01611	0.63	-2.6
1,732,675	-		CCNA_01611	0.67	-1.7
1,732,704	-		CCNA_01611	0.70	+0.9
1,732,715	+		CCNA_01611	0.72	-0.4
1,732,715	+		CCNA_01611	0.72	+0.9
1,732,715	+		CCNA_01611	0.72	+0.5
1,732,715	+		CCNA_01611	0.72	+0.5
1,732,717	+		CCNA_01611	0.72	-0.8
1,732,723	-		CCNA_01611	0.73	-0.1
1,732,723	-		CCNA_01611	0.73	+3.5
1,732,770	+		CCNA_01611	0.78	+1.3
1,732,784	+		CCNA_01611	0.80	-0.5
1,732,792	-		CCNA_01611	0.80	+0.7
1,732,792	-		CCNA_01611	0.80	+0.7
1,732,828	-		CCNA_01611	0.85	-3.3