Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01549

Experiment: a-Cyclodextrin (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Cyclodextrin (C)
1,661,377	-		CCNA_01548	0.19	-1.2
1,661,377	-		CCNA_01548	0.19	+1.0
1,661,414	-		CCNA_01548	0.22	-0.6
1,661,434	+		CCNA_01548	0.24	-0.6
1,661,434	+		CCNA_01548	0.24	+1.0
1,661,434	+		CCNA_01548	0.24	+1.2
1,661,459	-		CCNA_01548	0.26	-1.0
1,661,489	+		CCNA_01548	0.28	+4.1
1,661,509	+		CCNA_01548	0.30	+1.7
1,661,522	+		CCNA_01548	0.31	+0.1
1,661,532	+		CCNA_01548	0.32	+0.8
1,661,576	+		CCNA_01548	0.35	+1.4
1,661,581	+		CCNA_01548	0.36	+0.7
1,661,735	+		CCNA_01548	0.48	+0.6
1,661,745	+		CCNA_01548	0.49	+1.5
1,661,745	+		CCNA_01548	0.49	+1.8
1,661,745	+		CCNA_01548	0.49	+1.2
1,661,753	-		CCNA_01548	0.50	-0.6
1,661,771	+		CCNA_01548	0.51	+0.9
1,661,779	-		CCNA_01548	0.52	+0.4
1,661,826	+		CCNA_01548	0.56	+0.3
1,661,834	-		CCNA_01548	0.57	-0.5
1,661,869	-		CCNA_01548	0.60	-1.7
1,661,930	+		CCNA_01548	0.65	-0.0
1,661,986	+		CCNA_01548	0.69	+0.2
1,661,986	+		CCNA_01548	0.69	+1.1
1,661,994	-		CCNA_01548	0.70	-1.4
1,662,024	+		CCNA_01548	0.72	+0.4
1,662,041	+		CCNA_01548	0.74	+0.2
1,662,042	-		CCNA_01548	0.74	-1.6
1,662,088	+		CCNA_01548	0.78	+1.8
1,662,088	+		CCNA_01548	0.78	-0.3
1,662,088	+		CCNA_01548	0.78	-0.2
1,662,096	-		CCNA_01548	0.78	+2.4
1,662,119	+		CCNA_01548	0.80	+1.0
1,662,185	-		CCNA_01548	0.86	-0.3
1,662,204	-		CCNA_01548	0.87	+0.1
1,662,210	-		CCNA_01548	0.88	+1.2
1,662,210	-		CCNA_01548	0.88	-0.8
1,662,253	+				+0.0
1,662,253	-				+0.1
1,662,300	-				-1.2
1,662,333	-				-0.4
1,662,346	-				-1.8
1,662,349	+				+1.4
1,662,354	+				+3.2
1,662,354	+				+2.2
1,662,400	+				+0.4
1,662,400	-				+4.2
1,662,466	+				+0.6
1,662,466	+				+0.7
1,662,469	-				-1.0
1,662,474	-				-0.5
1,662,474	-				-1.3
1,662,474	-				+0.6
1,662,513	+				-1.6
1,662,531	-				-1.4
1,662,578	-		CCNA_01549	0.11	+0.4
1,662,656	-		CCNA_01549	0.15	-1.2
1,662,656	-		CCNA_01549	0.15	-0.8
1,662,662	+		CCNA_01549	0.15	-0.9
1,662,693	-		CCNA_01549	0.17	+0.2
1,662,696	+		CCNA_01549	0.17	+0.2
1,662,704	-		CCNA_01549	0.17	-1.3
1,662,759	-		CCNA_01549	0.20	-2.2
1,662,765	+		CCNA_01549	0.20	-0.5
1,662,779	+		CCNA_01549	0.21	-2.0
1,662,846	+		CCNA_01549	0.25	+0.2
1,662,883	-		CCNA_01549	0.27	-1.0
1,662,950	-		CCNA_01549	0.30	-2.8
1,662,951	-		CCNA_01549	0.30	-1.3
1,662,951	-		CCNA_01549	0.30	-1.4
1,662,951	-		CCNA_01549	0.30	-2.2
1,662,953	-		CCNA_01549	0.30	-0.8
1,662,987	+		CCNA_01549	0.32	-0.8
1,662,987	+		CCNA_01549	0.32	+0.2
1,662,987	+		CCNA_01549	0.32	-1.0
1,662,997	+		CCNA_01549	0.33	+0.4
1,662,997	+		CCNA_01549	0.33	+0.2
1,662,997	+		CCNA_01549	0.33	-2.4
1,663,005	-		CCNA_01549	0.33	-2.4
1,663,005	-		CCNA_01549	0.33	+1.4
1,663,013	-		CCNA_01549	0.33	-1.4
1,663,036	+		CCNA_01549	0.35	+0.6
1,663,044	-				+0.1
1,663,086	+		CCNA_01549	0.37	-1.9
1,663,098	-		CCNA_01549	0.38	+0.0
1,663,126	+		CCNA_01549	0.39	-1.1
1,663,134	-		CCNA_01549	0.40	-0.7
1,663,134	-		CCNA_01549	0.40	-2.0
1,663,196	+		CCNA_01549	0.43	-1.4
1,663,271	-		CCNA_01549	0.47	-1.1
1,663,286	-				+2.8
1,663,286	-		CCNA_01549	0.48	-2.3
1,663,391	-		CCNA_01549	0.53	-0.3
1,663,401	-		CCNA_01549	0.54	-3.6
1,663,411	+		CCNA_01549	0.54	+1.1
1,663,419	-		CCNA_01549	0.55	-1.7
1,663,442	+		CCNA_01549	0.56	+0.2
1,663,483	+		CCNA_01549	0.58	-0.2
1,663,491	-		CCNA_01549	0.59	-1.5
1,663,560	+		CCNA_01549	0.62	-0.9
1,663,560	+				+1.1
1,663,568	-		CCNA_01549	0.63	-2.3
1,663,568	-		CCNA_01549	0.63	-1.3
1,663,601	-		CCNA_01549	0.64	+0.2
1,663,602	-		CCNA_01549	0.64	-3.6
1,663,612	-		CCNA_01549	0.65	-0.8
1,663,621	+		CCNA_01549	0.65	-0.8
1,663,679	+				+1.8
1,663,691	+		CCNA_01549	0.69	-2.3
1,663,760	-		CCNA_01549	0.73	-2.8
1,663,766	-		CCNA_01549	0.73	-0.6
1,663,766	-		CCNA_01549	0.73	-1.4
1,663,766	-		CCNA_01549	0.73	-1.4
1,663,847	+		CCNA_01549	0.77	+1.4
1,663,863	+		CCNA_01549	0.78	-1.0
1,663,863	+		CCNA_01549	0.78	-1.3
1,663,907	-		CCNA_01549	0.80	-1.6
1,663,928	+		CCNA_01549	0.81	-0.3
1,663,944	-		CCNA_01549	0.82	-0.9
1,663,959	+		CCNA_01549	0.83	-0.3
1,664,009	+		CCNA_01549	0.86	-0.9
1,664,080	-		CCNA_01549	0.89	-1.8
1,664,080	-		CCNA_01549	0.89	-0.6
1,664,107	-				-1.6
1,664,108	-				+0.1
1,664,133	+				+1.8
1,664,141	+				+0.1
1,664,164	+				+0.2
1,664,167	-				-0.2
1,664,194	+				+1.1
1,664,196	+				+0.4
1,664,214	+				-1.0
1,664,263	+				-1.3
1,664,270	+				+0.8
1,664,325	+				+0.6
1,664,333	-				-0.8
1,664,333	-				-2.4
1,664,387	+		CCNA_01550	0.11	-1.1
1,664,387	+		CCNA_01550	0.11	-1.0
1,664,387	+		CCNA_01550	0.11	-0.8
1,664,395	-		CCNA_01550	0.12	-1.3
1,664,395	-		CCNA_01550	0.12	+0.4
1,664,395	-		CCNA_01550	0.12	-3.4
1,664,395	-		CCNA_01550	0.12	-0.7
1,664,395	-		CCNA_01550	0.12	-3.5
1,664,395	-		CCNA_01550	0.12	-0.5
1,664,395	-		CCNA_01550	0.12	-0.4
1,664,395	-		CCNA_01550	0.12	-1.0
1,664,410	+		CCNA_01550	0.13	+0.6
1,664,410	+		CCNA_01550	0.13	-1.4
1,664,410	+		CCNA_01550	0.13	-0.0
1,664,418	-		CCNA_01550	0.14	-3.2
1,664,418	-		CCNA_01550	0.14	-2.7
1,664,418	-		CCNA_01550	0.14	-0.3
1,664,418	-		CCNA_01550	0.14	-1.2
1,664,470	-		CCNA_01550	0.19	-0.7
1,664,501	-		CCNA_01550	0.22	-2.1
1,664,595	-		CCNA_01550	0.32	-1.1
1,664,675	+		CCNA_01550	0.40	+0.6
1,664,675	+		CCNA_01550	0.40	-2.6
1,664,691	+		CCNA_01550	0.42	+0.2
1,664,691	-		CCNA_01550	0.42	-1.9
1,664,741	-		CCNA_01550	0.47	-1.3
1,664,772	-		CCNA_01550	0.50	-2.3
1,664,795	-		CCNA_01550	0.52	-1.3
1,664,829	+		CCNA_01550	0.56	-0.2
1,664,830	+		CCNA_01550	0.56	+0.1
1,664,838	+		CCNA_01550	0.57	-0.7
1,664,855	+		CCNA_01550	0.59	+0.1
1,664,867	+		CCNA_01550	0.60	-3.8
1,664,867	+		CCNA_01550	0.60	-2.4
1,664,872	+		CCNA_01550	0.60	-1.4
1,664,875	-		CCNA_01550	0.61	-2.4
1,664,939	-		CCNA_01550	0.67	-0.4
1,664,943	+		CCNA_01550	0.67	-1.2
1,664,946	-		CCNA_01550	0.68	-2.8
1,664,967	+		CCNA_01550	0.70	+0.1
1,664,986	+		CCNA_01550	0.72	-0.4
1,664,996	+		CCNA_01550	0.73	-1.0
1,665,012	-		CCNA_01550	0.75	-1.9
1,665,035	-		CCNA_01550	0.77	-1.2
1,665,060	+		CCNA_01550	0.79	-2.1
1,665,068	+		CCNA_01550	0.80	-0.2
1,665,071	-		CCNA_01550	0.81	-1.2
1,665,071	-		CCNA_01550	0.81	-0.9
1,665,073	-		CCNA_01550	0.81	-0.7
1,665,099	-		CCNA_01550	0.83	-0.9
1,665,132	+		CCNA_01550	0.87	-0.2
1,665,143	+		CCNA_01550	0.88	+1.4
1,665,206	-				-2.0
1,665,257	+				-1.1