Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01413

Experiment: a-Cyclodextrin (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Cyclodextrin (C)
1,530,193	-		CCNA_01412	0.19	-2.6
1,530,208	+		CCNA_01412	0.20	+1.6
1,530,224	-		CCNA_01412	0.22	-1.7
1,530,231	+		CCNA_01412	0.22	+1.6
1,530,291	+		CCNA_01412	0.28	+0.6
1,530,299	-		CCNA_01412	0.28	-1.5
1,530,316	+		CCNA_01412	0.30	+1.4
1,530,316	+		CCNA_01412	0.30	+2.0
1,530,350	-		CCNA_01412	0.33	-0.7
1,530,368	+		CCNA_01412	0.34	+3.1
1,530,376	-		CCNA_01412	0.35	-0.7
1,530,380	+		CCNA_01412	0.35	+1.3
1,530,388	+		CCNA_01412	0.36	+2.6
1,530,403	+		CCNA_01412	0.37	+2.3
1,530,411	-		CCNA_01412	0.38	-0.9
1,530,422	+		CCNA_01412	0.39	+3.8
1,530,422	+		CCNA_01412	0.39	+2.3
1,530,469	+		CCNA_01412	0.43	+1.3
1,530,469	+		CCNA_01412	0.43	+0.8
1,530,469	+		CCNA_01412	0.43	+3.7
1,530,477	-		CCNA_01412	0.44	+0.1
1,530,505	+		CCNA_01412	0.46	+1.7
1,530,505	+		CCNA_01412	0.46	+2.4
1,530,506	+		CCNA_01412	0.46	+2.2
1,530,513	-		CCNA_01412	0.47	-2.5
1,530,513	-		CCNA_01412	0.47	-2.3
1,530,538	+		CCNA_01412	0.49	+1.8
1,530,538	+		CCNA_01412	0.49	+2.0
1,530,538	-		CCNA_01412	0.49	-0.8
1,530,539	+		CCNA_01412	0.49	+1.9
1,530,545	-		CCNA_01412	0.50	-0.8
1,530,546	-		CCNA_01412	0.50	-0.7
1,530,547	-		CCNA_01412	0.50	-0.0
1,530,548	+		CCNA_01412	0.50	+2.2
1,530,549	+		CCNA_01412	0.50	+1.2
1,530,607	+		CCNA_01412	0.55	+2.5
1,530,615	-		CCNA_01412	0.56	-0.7
1,530,624	+				+4.5
1,530,659	+		CCNA_01412	0.60	+0.9
1,530,665	+		CCNA_01412	0.60	+2.1
1,530,667	-		CCNA_01412	0.60	-1.9
1,530,686	+		CCNA_01412	0.62	+2.4
1,530,691	+		CCNA_01412	0.62	+3.5
1,530,696	+		CCNA_01412	0.63	+3.4
1,530,701	+		CCNA_01412	0.63	+2.6
1,530,701	+		CCNA_01412	0.63	+2.3
1,530,703	+		CCNA_01412	0.64	+2.9
1,530,709	-		CCNA_01412	0.64	+0.3
1,530,709	-		CCNA_01412	0.64	-1.8
1,530,709	-		CCNA_01412	0.64	+1.1
1,530,729	+		CCNA_01412	0.66	+1.8
1,530,748	+		CCNA_01412	0.67	+0.1
1,530,755	+		CCNA_01412	0.68	+2.6
1,530,760	+		CCNA_01412	0.68	+2.3
1,530,763	-		CCNA_01412	0.69	-1.7
1,530,767	+		CCNA_01412	0.69	+3.1
1,530,768	-		CCNA_01412	0.69	+0.3
1,530,805	+		CCNA_01412	0.72	+1.5
1,530,805	+		CCNA_01412	0.72	+1.7
1,530,813	-		CCNA_01412	0.73	-1.6
1,530,813	-		CCNA_01412	0.73	-1.6
1,530,828	-		CCNA_01412	0.74	-1.1
1,530,855	-		CCNA_01412	0.77	-1.1
1,530,912	+		CCNA_01412	0.82	+1.9
1,530,919	+		CCNA_01412	0.82	+2.4
1,530,922	-		CCNA_01412	0.83	+0.5
1,530,927	-		CCNA_01412	0.83	-1.3
1,530,957	+		CCNA_01412	0.86	+2.8
1,531,007	+				+3.1
1,531,007	+				+2.7
1,531,012	+				+1.9
1,531,015	-				+0.2
1,531,017	+				+2.1
1,531,068	+				+2.6
1,531,078	+				+2.9
1,531,100	+				+2.5
1,531,100	+				+3.0
1,531,211	+		CCNA_01413	0.14	+2.2
1,531,217	-		CCNA_01413	0.15	-1.2
1,531,226	+		CCNA_01413	0.16	+3.1
1,531,232	+		CCNA_01413	0.17	+2.0
1,531,234	-		CCNA_01413	0.18	-1.3
1,531,244	+		CCNA_01413	0.19	+2.1
1,531,250	+		CCNA_01413	0.20	+1.9
1,531,324	+		CCNA_01413	0.33	+2.0
1,531,344	+		CCNA_01413	0.36	+1.6
1,531,344	+		CCNA_01413	0.36	+2.1
1,531,344	+		CCNA_01413	0.36	+2.6
1,531,363	+		CCNA_01413	0.39	+4.7
1,531,380	+		CCNA_01413	0.42	+2.5
1,531,383	-		CCNA_01413	0.42	-1.2
1,531,388	-		CCNA_01413	0.43	-2.1
1,531,403	+		CCNA_01413	0.46	+1.7
1,531,499	+		CCNA_01413	0.62	+1.1
1,531,546	-		CCNA_01413	0.70	-0.2
1,531,573	+		CCNA_01413	0.74	+1.6
1,531,581	-		CCNA_01413	0.76	-1.0
1,531,596	-		CCNA_01413	0.78	+0.6
1,531,609	+		CCNA_01413	0.80	+2.5
1,531,625	+		CCNA_01413	0.83	+1.5
1,531,722	+				+2.6
1,531,746	+				+1.0
1,531,754	+				+2.4
1,531,754	+				+2.2
1,531,754	+				+2.0
1,531,754	+				+2.6
1,531,754	+				+0.4
1,531,754	+				+2.2
1,531,754	+				+2.5
1,531,754	+				+2.5
1,531,754	+				+1.4
1,531,762	-				-2.9
1,531,762	-				-2.3
1,531,790	+				+3.9
1,531,795	+				+2.9
1,531,801	+				+2.5
1,531,846	+		CCNA_01414	0.10	+4.5
1,531,849	-		CCNA_01414	0.11	-0.0
1,531,856	+		CCNA_01414	0.11	+0.0
1,531,856	+		CCNA_01414	0.11	+2.5
1,531,856	+		CCNA_01414	0.11	+2.9
1,531,864	-		CCNA_01414	0.12	+1.5
1,531,866	-		CCNA_01414	0.12	+0.3
1,531,887	+		CCNA_01414	0.14	-1.2
1,531,892	+		CCNA_01414	0.15	+2.0
1,531,892	+		CCNA_01414	0.15	+1.8
1,531,911	-		CCNA_01414	0.17	-1.3
1,531,949	+				+4.2
1,531,974	+		CCNA_01414	0.23	+2.0
1,532,038	-		CCNA_01414	0.29	-1.2
1,532,064	+		CCNA_01414	0.31	+4.6
1,532,066	+		CCNA_01414	0.31	+1.8
1,532,102	+		CCNA_01414	0.35	+2.7
1,532,153	+		CCNA_01414	0.40	+3.3
1,532,154	+		CCNA_01414	0.40	+2.7
1,532,164	+		CCNA_01414	0.41	+2.9
1,532,173	+		CCNA_01414	0.42	+2.9
1,532,183	+		CCNA_01414	0.42	+2.7
1,532,211	+		CCNA_01414	0.45	+2.9
1,532,245	+		CCNA_01414	0.48	+2.6
1,532,245	+		CCNA_01414	0.48	+2.4
1,532,245	+		CCNA_01414	0.48	+2.3
1,532,245	+		CCNA_01414	0.48	+1.5
1,532,245	+		CCNA_01414	0.48	+1.9
1,532,245	+		CCNA_01414	0.48	+1.8
1,532,253	-		CCNA_01414	0.49	-0.5
1,532,253	-		CCNA_01414	0.49	-1.2
1,532,253	-		CCNA_01414	0.49	-1.2
1,532,267	+		CCNA_01414	0.50	+1.3
1,532,267	+		CCNA_01414	0.50	+2.2
1,532,313	+		CCNA_01414	0.55	+1.2
1,532,379	+		CCNA_01414	0.61	+2.6
1,532,384	+		CCNA_01414	0.62	+2.0
1,532,396	+		CCNA_01414	0.63	+2.8
1,532,414	+		CCNA_01414	0.64	+1.8
1,532,496	-		CCNA_01414	0.72	+0.6
1,532,507	+		CCNA_01414	0.73	+3.0
1,532,508	-		CCNA_01414	0.73	-1.2
1,532,533	-		CCNA_01414	0.76	-1.4
1,532,540	-		CCNA_01414	0.76	-0.8
1,532,540	-		CCNA_01414	0.76	-0.3
1,532,554	+		CCNA_01414	0.78	+1.7
1,532,677	+		CCNA_01414	0.89	+1.6
1,532,685	-				-2.0
1,532,687	+				+1.7
1,532,689	+				+2.8
1,532,707	+				+2.4
1,532,707	+				+3.1
1,532,707	+				+1.7
1,532,715	-				-0.4