Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01304

Experiment: a-Cyclodextrin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01303 and CCNA_01304 are separated by 228 nucleotidesCCNA_01304 and CCNA_01305 are separated by 13 nucleotidesCCNA_01305 and CCNA_01306 overlap by 23 nucleotides CCNA_01303: CCNA_01303 - hypothetical protein, at 1,430,061 to 1,430,900 _01303 CCNA_01304: CCNA_01304 - hypothetical protein, at 1,431,129 to 1,431,329 _01304 CCNA_01305: CCNA_01305 - SSU ribosomal protein S10P, at 1,431,343 to 1,431,651 _01305 CCNA_01306: CCNA_01306 - LSU ribosomal protein L3P, at 1,431,629 to 1,432,432 _01306 Position (kb) 1431 1432Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1430.183 kb on + strand, within CCNA_01303at 1430.183 kb on + strand, within CCNA_01303at 1430.192 kb on + strand, within CCNA_01303at 1430.193 kb on - strand, within CCNA_01303at 1430.223 kb on + strand, within CCNA_01303at 1430.276 kb on + strand, within CCNA_01303at 1430.283 kb on - strand, within CCNA_01303at 1430.316 kb on + strand, within CCNA_01303at 1430.324 kb on - strand, within CCNA_01303at 1430.329 kb on - strand, within CCNA_01303at 1430.344 kb on - strand, within CCNA_01303at 1430.349 kb on - strand, within CCNA_01303at 1430.452 kb on + strand, within CCNA_01303at 1430.457 kb on + strand, within CCNA_01303at 1430.500 kb on - strand, within CCNA_01303at 1430.506 kb on - strand, within CCNA_01303at 1430.506 kb on - strand, within CCNA_01303at 1430.529 kb on + strand, within CCNA_01303at 1430.595 kb on + strand, within CCNA_01303at 1430.635 kb on - strand, within CCNA_01303at 1430.654 kb on - strand, within CCNA_01303at 1430.708 kb on + strand, within CCNA_01303at 1430.716 kb on - strand, within CCNA_01303at 1430.716 kb on - strand, within CCNA_01303at 1430.716 kb on - strand, within CCNA_01303at 1430.747 kb on - strand, within CCNA_01303at 1430.789 kb on - strand, within CCNA_01303at 1430.825 kb on + strandat 1430.864 kb on + strandat 1430.885 kb on - strandat 1430.890 kb on + strandat 1430.900 kb on + strandat 1430.931 kb on + strandat 1430.939 kb on - strandat 1430.953 kb on + strandat 1430.983 kb on - strandat 1431.021 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin (C)
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1,430,183 + CCNA_01303 0.15 +1.5
1,430,183 + CCNA_01303 0.15 -0.1
1,430,192 + CCNA_01303 0.16 +1.0
1,430,193 - CCNA_01303 0.16 -1.0
1,430,223 + CCNA_01303 0.19 +0.7
1,430,276 + CCNA_01303 0.26 +3.0
1,430,283 - CCNA_01303 0.26 +0.3
1,430,316 + CCNA_01303 0.30 +1.8
1,430,324 - CCNA_01303 0.31 +0.5
1,430,329 - CCNA_01303 0.32 +2.0
1,430,344 - CCNA_01303 0.34 -2.9
1,430,349 - CCNA_01303 0.34 -0.9
1,430,452 + CCNA_01303 0.47 +2.2
1,430,457 + CCNA_01303 0.47 +1.3
1,430,500 - CCNA_01303 0.52 +1.2
1,430,506 - CCNA_01303 0.53 +3.1
1,430,506 - CCNA_01303 0.53 +0.1
1,430,529 + CCNA_01303 0.56 +0.5
1,430,595 + CCNA_01303 0.64 +1.0
1,430,635 - CCNA_01303 0.68 +0.4
1,430,654 - CCNA_01303 0.71 -1.4
1,430,708 + CCNA_01303 0.77 +1.8
1,430,716 - CCNA_01303 0.78 -1.4
1,430,716 - CCNA_01303 0.78 -0.4
1,430,716 - CCNA_01303 0.78 -2.4
1,430,747 - CCNA_01303 0.82 +0.3
1,430,789 - CCNA_01303 0.87 +1.1
1,430,825 + +2.7
1,430,864 + +2.0
1,430,885 - -3.0
1,430,890 + +1.1
1,430,900 + +1.8
1,430,931 + +2.0
1,430,939 - -0.2
1,430,953 + +2.1
1,430,983 - +0.5
1,431,021 + +2.7

Or see this region's nucleotide sequence