Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01159

Experiment: a-Cyclodextrin (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Cyclodextrin (C)
1,266,006	+		CCNA_01158	0.63	+0.3
1,266,006	+		CCNA_01158	0.63	-1.2
1,266,007	-		CCNA_01158	0.63	-0.6
1,266,014	-		CCNA_01158	0.64	+1.5
1,266,014	-		CCNA_01158	0.64	-0.5
1,266,014	-		CCNA_01158	0.64	-1.1
1,266,014	-		CCNA_01158	0.64	-2.5
1,266,014	-		CCNA_01158	0.64	-1.1
1,266,016	+		CCNA_01158	0.64	+0.6
1,266,023	+		CCNA_01158	0.64	-0.7
1,266,031	-		CCNA_01158	0.65	-2.9
1,266,031	-		CCNA_01158	0.65	+0.3
1,266,051	-		CCNA_01158	0.66	+0.1
1,266,051	-		CCNA_01158	0.66	-0.1
1,266,057	+		CCNA_01158	0.66	+0.3
1,266,062	+		CCNA_01158	0.66	-0.2
1,266,067	+		CCNA_01158	0.66	+0.9
1,266,067	+		CCNA_01158	0.66	+1.0
1,266,067	+		CCNA_01158	0.66	+0.4
1,266,075	-		CCNA_01158	0.67	-0.7
1,266,108	+		CCNA_01158	0.69	+1.1
1,266,108	+		CCNA_01158	0.69	+1.1
1,266,130	+		CCNA_01158	0.70	+0.4
1,266,130	+		CCNA_01158	0.70	-2.3
1,266,130	+		CCNA_01158	0.70	-0.3
1,266,131	+		CCNA_01158	0.70	+1.6
1,266,138	-		CCNA_01158	0.70	+0.1
1,266,138	-		CCNA_01158	0.70	+0.1
1,266,138	-		CCNA_01158	0.70	-2.9
1,266,138	-		CCNA_01158	0.70	-1.1
1,266,194	+		CCNA_01158	0.73	-0.8
1,266,199	+		CCNA_01158	0.73	+0.7
1,266,199	+		CCNA_01158	0.73	-0.9
1,266,199	+		CCNA_01158	0.73	-0.1
1,266,199	+		CCNA_01158	0.73	-1.1
1,266,199	+		CCNA_01158	0.73	+0.7
1,266,199	+		CCNA_01158	0.73	+0.2
1,266,199	+		CCNA_01158	0.73	-0.9
1,266,199	+		CCNA_01158	0.73	-2.1
1,266,199	+		CCNA_01158	0.73	+0.5
1,266,207	-		CCNA_01158	0.74	-1.0
1,266,207	-		CCNA_01158	0.74	-0.9
1,266,207	-		CCNA_01158	0.74	-1.0
1,266,207	-		CCNA_01158	0.74	-1.5
1,266,218	+		CCNA_01158	0.74	+1.0
1,266,248	+		CCNA_01158	0.76	-0.2
1,266,249	+		CCNA_01158	0.76	-0.1
1,266,281	-		CCNA_01158	0.78	-1.1
1,266,292	+		CCNA_01158	0.78	-0.3
1,266,298	-		CCNA_01158	0.79	+0.4
1,266,300	-		CCNA_01158	0.79	-2.4
1,266,310	+		CCNA_01158	0.79	+0.6
1,266,355	+		CCNA_01158	0.81	+1.0
1,266,356	+		CCNA_01158	0.82	-0.1
1,266,356	+		CCNA_01158	0.82	+1.2
1,266,364	-		CCNA_01158	0.82	-0.4
1,266,364	-		CCNA_01158	0.82	+0.8
1,266,364	-		CCNA_01158	0.82	+0.5
1,266,364	-		CCNA_01158	0.82	-1.5
1,266,364	-		CCNA_01158	0.82	-0.2
1,266,408	+		CCNA_01158	0.84	+2.7
1,266,421	+		CCNA_01158	0.85	+0.5
1,266,429	-		CCNA_01158	0.85	+0.1
1,266,429	-		CCNA_01158	0.85	-0.9
1,266,429	-		CCNA_01158	0.85	-0.9
1,266,449	+		CCNA_01158	0.86	-0.1
1,266,449	+		CCNA_01158	0.86	+0.6
1,266,457	-		CCNA_01158	0.87	-1.8
1,266,474	-		CCNA_01158	0.88	+0.2
1,266,485	-		CCNA_01158	0.88	-1.9
1,266,539	-				+2.5
1,266,545	-				-1.4
1,266,559	+				+1.9
1,266,564	+				+0.4
1,266,578	-				+0.3
1,266,585	+				+0.6
1,266,585	+				-1.2
1,266,622	+				-1.8
1,266,648	+				+1.4
1,266,648	+				-1.4
1,266,654	-				-1.9
1,266,656	-				+0.0
1,266,656	-				-0.5
1,266,656	-				-1.4
1,266,656	-				-1.7
1,266,663	+				-1.2
1,266,671	+				-0.3
1,266,678	+				-0.9
1,266,679	-				-1.4
1,266,714	+				+0.8
1,266,758	-				-1.3
1,266,758	-				+2.3
1,266,786	+				-1.6
1,266,794	-				-2.0
1,266,902	+				+1.2
1,266,902	+				-1.2
1,266,907	+				-2.2
1,266,954	+		CCNA_03946	0.82	-0.5
1,266,975	+				+1.1
1,266,975	+				-0.4
1,266,981	+				-1.4
1,267,001	-				+0.4
1,267,046	+				+0.1
1,267,064	+				-2.4
1,267,077	+				-1.5
1,267,077	+				-1.4
1,267,077	+				-0.9
1,267,085	+				-1.9
1,267,085	-				-1.1
1,267,104	-		CCNA_01159	0.11	-0.9
1,267,111	-		CCNA_01159	0.11	-2.3
1,267,118	+		CCNA_01159	0.12	-0.7
1,267,132	+		CCNA_01159	0.13	-0.5
1,267,151	-		CCNA_01159	0.14	-1.7
1,267,192	+		CCNA_01159	0.17	-0.9
1,267,195	-		CCNA_01159	0.17	-0.9
1,267,272	+		CCNA_01159	0.23	-0.6
1,267,280	+		CCNA_01159	0.24	-2.5
1,267,280	+		CCNA_01159	0.24	-2.5
1,267,280	+		CCNA_01159	0.24	-1.2
1,267,280	+		CCNA_01159	0.24	-1.1
1,267,280	-		CCNA_01159	0.24	-0.6
1,267,281	-		CCNA_01159	0.24	-1.1
1,267,288	-		CCNA_01159	0.24	-0.5
1,267,290	+		CCNA_01159	0.24	-2.1
1,267,313	-		CCNA_01159	0.26	+0.1
1,267,332	+		CCNA_01159	0.28	-2.5
1,267,332	+		CCNA_01159	0.28	+0.5
1,267,340	-		CCNA_01159	0.28	-0.6
1,267,368	+		CCNA_01159	0.30	-2.2
1,267,374	+		CCNA_01159	0.31	-1.1
1,267,384	+		CCNA_01159	0.31	-1.7
1,267,384	+		CCNA_01159	0.31	-2.4
1,267,411	+		CCNA_01159	0.33	-2.2
1,267,429	-		CCNA_01159	0.35	-1.4
1,267,447	-		CCNA_01159	0.36	-0.5
1,267,461	+		CCNA_01159	0.37	-2.8
1,267,464	+		CCNA_01159	0.37	-2.5
1,267,522	+		CCNA_01159	0.42	-1.8
1,267,553	+		CCNA_01159	0.44	-1.7
1,267,559	+		CCNA_01159	0.44	-0.8
1,267,561	-		CCNA_01159	0.44	-2.2
1,267,565	+		CCNA_01159	0.45	+0.8
1,267,565	+		CCNA_01159	0.45	-0.5
1,267,565	+		CCNA_01159	0.45	+0.3
1,267,565	+		CCNA_01159	0.45	-0.9
1,267,565	+		CCNA_01159	0.45	-0.1
1,267,565	+		CCNA_01159	0.45	-2.1
1,267,565	+		CCNA_01159	0.45	-2.0
1,267,573	-		CCNA_01159	0.45	-0.2
1,267,655	+		CCNA_01159	0.51	-0.6
1,267,720	-		CCNA_01159	0.56	-2.7
1,267,748	+		CCNA_01159	0.58	-1.5
1,267,748	+		CCNA_01159	0.58	+1.3
1,267,756	-		CCNA_01159	0.59	-2.2
1,267,766	-		CCNA_01159	0.60	-1.1
1,267,776	-		CCNA_01159	0.60	+0.5
1,267,797	+		CCNA_01159	0.62	-0.2
1,267,797	+		CCNA_01159	0.62	-1.2
1,267,808	+		CCNA_01159	0.63	+0.5
1,267,816	+		CCNA_01159	0.63	-2.5
1,267,824	-		CCNA_01159	0.64	-2.3
1,267,854	+		CCNA_01159	0.66	-1.7
1,267,854	+		CCNA_01159	0.66	-1.9
1,267,857	-		CCNA_01159	0.66	-1.2
1,267,862	+		CCNA_01159	0.67	-1.7
1,267,869	+		CCNA_01159	0.67	+0.1
1,267,874	+		CCNA_01159	0.68	-1.2
1,267,877	-		CCNA_01159	0.68	-1.4
1,267,910	+		CCNA_01159	0.70	-1.5
1,267,916	+		CCNA_01159	0.71	-2.9
1,267,916	+		CCNA_01159	0.71	-0.9
1,267,922	-		CCNA_01159	0.71	-1.4
1,267,922	-		CCNA_01159	0.71	-1.6
1,267,927	+		CCNA_01159	0.71	+0.2
1,267,929	-		CCNA_01159	0.72	+2.1
1,267,934	+		CCNA_01159	0.72	-3.4
1,267,954	+		CCNA_01159	0.73	+1.3
1,267,959	+		CCNA_01159	0.74	-4.2
1,267,967	+		CCNA_01159	0.74	+0.5
1,267,967	-		CCNA_01159	0.74	-2.5
1,267,991	-		CCNA_01159	0.76	-1.0
1,268,000	+		CCNA_01159	0.77	-2.3
1,268,003	-		CCNA_01159	0.77	-1.9
1,268,005	+		CCNA_01159	0.77	-1.3
1,268,010	+		CCNA_01159	0.78	-1.7
1,268,013	-		CCNA_01159	0.78	-1.0
1,268,018	-		CCNA_01159	0.78	-1.7
1,268,026	+		CCNA_01159	0.79	-1.4
1,268,034	-		CCNA_01159	0.79	+2.1
1,268,083	-		CCNA_01159	0.83	-1.3
1,268,119	+		CCNA_01159	0.86	-1.6
1,268,122	-		CCNA_01159	0.86	+0.3
1,268,124	+		CCNA_01159	0.86	-0.0
1,268,135	-		CCNA_01159	0.87	-1.4
1,268,158	+		CCNA_01159	0.88	-2.0
1,268,184	-				-0.4
1,268,200	+				-0.4
1,268,200	+				+0.4
1,268,200	+				+0.1
1,268,218	-				-0.4
1,268,231	-				-0.2
1,268,236	-				-0.5
1,268,239	+				+0.6
1,268,239	+				-1.0
1,268,301	-				+0.5
1,268,310	+				+0.4
1,268,322	-				-1.8
1,268,325	+				+1.9
1,268,333	-				+0.5
1,268,350	-				+0.1
1,268,383	+				+1.2
1,268,391	-				+0.9
1,268,393	+				-2.8
1,268,402	-				-0.4
1,268,484	-				-0.4
1,268,516	+				+0.1
1,268,534	+				-0.6
1,268,534	+				-0.4
1,268,534	+				+0.7
1,268,581	-				+0.6
1,268,603	-				+0.0
1,268,603	-				+0.1
1,268,624	+				-1.0
1,268,639	+				+1.2
1,268,660	+		CCNA_01161	0.10	-0.9
1,268,697	-		CCNA_01161	0.13	+0.6
1,268,742	-		CCNA_01161	0.16	-2.6
1,268,804	+		CCNA_01161	0.21	+1.7
1,268,804	+		CCNA_01161	0.21	-1.8
1,268,804	+		CCNA_01161	0.21	-0.4
1,268,809	+		CCNA_01161	0.21	-1.5
1,268,809	+		CCNA_01161	0.21	+0.1
1,268,810	-		CCNA_01161	0.22	-1.0
1,268,832	-		CCNA_01161	0.23	-2.7
1,268,850	+		CCNA_01161	0.24	-0.5
1,268,869	+		CCNA_01161	0.26	+1.1
1,268,890	-		CCNA_01161	0.27	-0.6
1,268,903	+		CCNA_01161	0.28	-1.5
1,268,968	+		CCNA_01161	0.33	-1.9
1,268,968	+		CCNA_01161	0.33	-0.8
1,269,036	+		CCNA_01161	0.38	-0.1
1,269,037	-		CCNA_01161	0.38	-0.5
1,269,088	-		CCNA_01161	0.42	+0.9
1,269,096	-		CCNA_01161	0.43	-0.9
1,269,099	+		CCNA_01161	0.43	-1.4
1,269,116	+		CCNA_01161	0.44	-0.2
1,269,116	-		CCNA_01161	0.44	-0.8
1,269,129	+		CCNA_01161	0.45	-1.1
1,269,129	+		CCNA_01161	0.45	-1.0
1,269,129	+		CCNA_01161	0.45	+1.8
1,269,129	+		CCNA_01161	0.45	+0.4
1,269,129	+		CCNA_01161	0.45	-0.8
1,269,129	+		CCNA_01161	0.45	-0.8
1,269,137	-		CCNA_01161	0.46	+0.1
1,269,137	-		CCNA_01161	0.46	-1.1
1,269,150	+		CCNA_01161	0.47	+0.1
1,269,150	+		CCNA_01161	0.47	+0.1
1,269,150	+		CCNA_01161	0.47	+0.7
1,269,150	+		CCNA_01161	0.47	-0.5
1,269,231	+		CCNA_01161	0.53	+2.7
1,269,231	+		CCNA_01161	0.53	+2.7
1,269,231	+		CCNA_01161	0.53	+2.9
1,269,231	+		CCNA_01161	0.53	+4.1
1,269,301	+		CCNA_01161	0.58	+2.1
1,269,309	-		CCNA_01161	0.59	-2.5