Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01121

Experiment: a-Cyclodextrin (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Cyclodextrin (C)
1,223,587	+				+1.9
1,223,587	+				+2.1
1,223,587	+				+2.3
1,223,587	+				+1.7
1,223,587	+				+2.3
1,223,590	-				-2.7
1,223,595	-				+2.6
1,223,595	-				-0.9
1,223,595	-				-1.6
1,223,608	+				-0.2
1,223,614	-				-1.9
1,223,616	-				-0.6
1,223,616	-				+1.0
1,223,631	+				+1.1
1,223,639	-				-1.4
1,223,639	-				+0.9
1,223,662	-				-1.4
1,223,684	-				-1.1
1,223,685	+				+0.8
1,223,685	+				-1.0
1,223,685	+				+1.3
1,223,685	+				-1.1
1,223,693	-				-1.1
1,223,693	-				-1.1
1,223,695	+				+0.1
1,223,697	+				-0.3
1,223,703	-				-0.7
1,223,703	-				-0.9
1,223,703	-				-0.9
1,223,703	-				+0.4
1,223,746	+				+2.2
1,223,746	+				+0.1
1,223,746	+				+0.0
1,223,746	+				+0.5
1,223,754	-				-2.0
1,223,754	-				-1.2
1,223,754	-				+0.8
1,223,754	-				-2.4
1,223,822	-		CCNA_01119	0.26	-1.5
1,223,835	-		CCNA_01119	0.30	+0.7
1,223,839	+		CCNA_01119	0.31	+0.9
1,223,846	+		CCNA_01119	0.33	-1.1
1,223,847	-		CCNA_01119	0.33	-0.8
1,223,867	+		CCNA_01119	0.38	+2.8
1,223,894	-		CCNA_01119	0.45	-1.3
1,223,901	-		CCNA_01119	0.47	-1.4
1,223,928	+		CCNA_01119	0.54	+2.3
1,223,951	-		CCNA_01119	0.60	-1.2
1,223,951	-		CCNA_01119	0.60	+0.0
1,224,013	-		CCNA_01119	0.76	-1.7
1,224,042	-		CCNA_01119	0.84	-1.8
1,224,062	-		CCNA_01119	0.89	-3.1
1,224,078	+				+0.6
1,224,097	+				-0.2
1,224,118	+				-0.7
1,224,135	+				+0.2
1,224,135	+				+0.4
1,224,143	-				-1.4
1,224,145	+				+1.6
1,224,153	+				+1.3
1,224,240	-		CCNA_01120	0.38	-1.9
1,224,247	+		CCNA_01120	0.43	-2.6
1,224,259	+		CCNA_01120	0.52	-1.6
1,224,279	-		CCNA_01120	0.67	-0.3
1,224,313	-				-0.7
1,224,356	-				-0.1
1,224,369	+				+1.4
1,224,442	-				-1.5
1,224,451	+				-0.6
1,224,496	+				+0.8
1,224,537	-				+0.3
1,224,540	-				-1.7
1,224,545	-				-1.0
1,224,574	+				-2.1
1,224,582	-				-3.2
1,224,608	-				-3.0
1,224,608	-				-1.2
1,224,630	-				-1.4
1,224,677	-		CCNA_01121	0.12	+0.5
1,224,690	+		CCNA_01121	0.13	-0.2
1,224,718	+		CCNA_01121	0.15	+2.5
1,224,723	+		CCNA_01121	0.15	+1.2
1,224,723	+		CCNA_01121	0.15	-0.7
1,224,723	+		CCNA_01121	0.15	+1.3
1,224,723	+		CCNA_01121	0.15	-1.2
1,224,731	-		CCNA_01121	0.16	+0.3
1,224,731	-		CCNA_01121	0.16	-0.2
1,224,731	-		CCNA_01121	0.16	+0.5
1,224,813	+		CCNA_01121	0.21	-1.1
1,224,861	+		CCNA_01121	0.24	+1.1
1,224,868	+		CCNA_01121	0.25	-0.3
1,224,871	-		CCNA_01121	0.25	-0.5
1,224,876	-		CCNA_01121	0.25	+2.8
1,224,885	-		CCNA_01121	0.26	-0.6
1,224,899	-		CCNA_01121	0.27	+0.7
1,224,901	+		CCNA_01121	0.27	-1.5
1,224,908	+		CCNA_01121	0.27	-0.6
1,224,908	+		CCNA_01121	0.27	-2.4
1,224,916	+		CCNA_01121	0.28	-0.8
1,224,916	+		CCNA_01121	0.28	-1.7
1,224,916	+		CCNA_01121	0.28	-1.4
1,224,926	+		CCNA_01121	0.29	+0.2
1,224,960	-		CCNA_01121	0.31	-1.3
1,224,966	-		CCNA_01121	0.31	-1.5
1,224,972	+		CCNA_01121	0.32	+3.0
1,224,972	+		CCNA_01121	0.32	-0.7
1,224,980	-		CCNA_01121	0.32	-2.1
1,224,980	-		CCNA_01121	0.32	+0.8
1,225,006	-		CCNA_01121	0.34	-2.9
1,225,042	+		CCNA_01121	0.36	-0.8
1,225,042	+		CCNA_01121	0.36	-2.1
1,225,044	+				+1.0
1,225,047	-		CCNA_01121	0.37	-1.1
1,225,052	+		CCNA_01121	0.37	+0.4
1,225,052	+		CCNA_01121	0.37	+0.3
1,225,052	+		CCNA_01121	0.37	+1.2
1,225,052	+		CCNA_01121	0.37	-0.3
1,225,052	+				+1.4
1,225,122	+		CCNA_01121	0.42	+0.0
1,225,129	+		CCNA_01121	0.42	+0.6
1,225,134	+		CCNA_01121	0.42	-0.1
1,225,137	-		CCNA_01121	0.43	-1.4
1,225,151	+		CCNA_01121	0.43	-1.3
1,225,151	+		CCNA_01121	0.43	+0.4
1,225,151	+		CCNA_01121	0.43	-0.5
1,225,159	-		CCNA_01121	0.44	-0.4
1,225,245	+		CCNA_01121	0.50	+0.7
1,225,263	+		CCNA_01121	0.51	+0.2
1,225,264	+		CCNA_01121	0.51	-0.8
1,225,291	+		CCNA_01121	0.53	-1.1
1,225,309	-		CCNA_01121	0.54	-1.2
1,225,326	-		CCNA_01121	0.55	-0.6
1,225,336	+		CCNA_01121	0.56	-0.7
1,225,344	-		CCNA_01121	0.56	-1.3
1,225,357	+		CCNA_01121	0.57	-0.2
1,225,431	-		CCNA_01121	0.62	-3.7
1,225,436	-		CCNA_01121	0.62	-1.5
1,225,443	-		CCNA_01121	0.63	-0.2
1,225,446	+		CCNA_01121	0.63	-1.8
1,225,454	-		CCNA_01121	0.63	+1.0
1,225,454	-		CCNA_01121	0.63	-1.3
1,225,454	-		CCNA_01121	0.63	+0.8
1,225,454	-		CCNA_01121	0.63	-2.3
1,225,454	-		CCNA_01121	0.63	-0.3
1,225,454	-		CCNA_01121	0.63	-1.8
1,225,499	+		CCNA_01121	0.66	+1.9
1,225,499	+		CCNA_01121	0.66	-0.9
1,225,499	+		CCNA_01121	0.66	+0.4
1,225,546	+		CCNA_01121	0.70	+1.7
1,225,574	+		CCNA_01121	0.71	+1.9
1,225,590	+		CCNA_01121	0.72	-0.5
1,225,599	-		CCNA_01121	0.73	-1.0
1,225,612	+		CCNA_01121	0.74	+1.4
1,225,620	-		CCNA_01121	0.74	-1.2
1,225,639	-		CCNA_01121	0.76	-0.7
1,225,669	+		CCNA_01121	0.78	-1.1
1,225,669	+		CCNA_01121	0.78	-1.6
1,225,669	+		CCNA_01121	0.78	-1.7
1,225,677	-		CCNA_01121	0.78	-1.9
1,225,677	-		CCNA_01121	0.78	+0.2
1,225,712	-		CCNA_01121	0.80	+1.0
1,225,713	+		CCNA_01121	0.81	-0.8
1,225,735	-		CCNA_01121	0.82	-1.2
1,225,738	+		CCNA_01121	0.82	+1.8
1,225,738	+		CCNA_01121	0.82	+0.9
1,225,738	+		CCNA_01121	0.82	+0.4
1,225,738	+		CCNA_01121	0.82	+0.4
1,225,738	+		CCNA_01121	0.82	-0.2
1,225,738	+		CCNA_01121	0.82	+0.1
1,225,738	+		CCNA_01121	0.82	-1.4
1,225,738	+		CCNA_01121	0.82	+0.2
1,225,738	+				+4.2
1,225,738	+		CCNA_01121	0.82	-0.6
1,225,738	+		CCNA_01121	0.82	-0.2
1,225,746	-		CCNA_01121	0.83	-0.8
1,225,746	-		CCNA_01121	0.83	-0.9
1,225,746	-		CCNA_01121	0.83	-1.3
1,225,746	-		CCNA_01121	0.83	+0.0
1,225,746	-		CCNA_01121	0.83	-0.2
1,225,746	-		CCNA_01121	0.83	-1.1
1,225,746	-		CCNA_01121	0.83	+2.1
1,225,746	-		CCNA_01121	0.83	+0.4
1,225,748	-		CCNA_01121	0.83	+0.0
1,225,802	+		CCNA_01121	0.86	-0.8
1,225,802	+		CCNA_01121	0.86	+1.6
1,225,809	+		CCNA_01121	0.87	+1.0
1,225,814	+				+4.6
1,225,851	+		CCNA_01121	0.90	+0.0
1,225,851	+		CCNA_01121	0.90	+1.3
1,225,965	+				+0.7
1,225,973	+				+0.2
1,225,975	+				+1.8
1,225,975	+				+0.3
1,225,975	+				+0.8
1,226,060	+				+2.1
1,226,083	-				+0.2
1,226,084	+				+0.6
1,226,115	+				+2.3
1,226,122	+				+1.9
1,226,122	+				-0.1
1,226,130	-				-0.6
1,226,146	+				+1.4
1,226,154	-				-2.9
1,226,154	-				+0.4
1,226,155	-				-1.1
1,226,195	+				+1.0
1,226,210	+				+1.6
1,226,210	+				+0.0
1,226,218	-				-1.3
1,226,218	-				-0.7
1,226,223	-				+1.0
1,226,235	+				+1.7
1,226,235	+				+0.8
1,226,243	-				-1.2
1,226,249	-				+4.6
1,226,270	+				+0.9
1,226,288	+				+1.5
1,226,289	-				+1.3
1,226,289	-				-1.1
1,226,297	+		CCNA_01122	0.10	+3.0
1,226,357	+		CCNA_01122	0.14	+0.2
1,226,390	+		CCNA_01122	0.16	+1.0
1,226,390	-		CCNA_01122	0.16	+0.2
1,226,453	+		CCNA_01122	0.20	+0.9
1,226,461	-		CCNA_01122	0.21	-0.9
1,226,461	-		CCNA_01122	0.21	-1.7
1,226,489	+		CCNA_01122	0.23	+1.2
1,226,513	-		CCNA_01122	0.24	-0.2
1,226,533	+		CCNA_01122	0.26	+0.4
1,226,541	-		CCNA_01122	0.26	-2.3
1,226,546	+		CCNA_01122	0.26	+1.1
1,226,553	+		CCNA_01122	0.27	+1.7
1,226,553	+		CCNA_01122	0.27	+1.0
1,226,592	+		CCNA_01122	0.29	-0.4
1,226,597	+		CCNA_01122	0.30	+1.3
1,226,597	+		CCNA_01122	0.30	+0.2
1,226,605	-		CCNA_01122	0.30	+0.8
1,226,636	+		CCNA_01122	0.32	+1.7
1,226,641	+		CCNA_01122	0.33	+2.8
1,226,646	+		CCNA_01122	0.33	+1.7
1,226,654	-		CCNA_01122	0.33	-1.1
1,226,749	+		CCNA_01122	0.40	+2.6
1,226,749	+		CCNA_01122	0.40	+0.4
1,226,772	-		CCNA_01122	0.41	-2.5
1,226,836	-		CCNA_01122	0.45	-0.6
1,226,836	-		CCNA_01122	0.45	-2.6
1,226,864	+		CCNA_01122	0.47	+1.1
1,226,900	+		CCNA_01122	0.49	+0.7
1,226,900	+		CCNA_01122	0.49	+1.4
1,226,910	+		CCNA_01122	0.50	+4.7
1,226,910	+		CCNA_01122	0.50	+4.9
1,226,910	+		CCNA_01122	0.50	+2.3
1,226,974	-		CCNA_01122	0.54	-2.5
1,227,006	-		CCNA_01122	0.56	-0.1