Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00890

Experiment: a-Cyclodextrin (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00888 and CCNA_00889 are separated by 3 nucleotidesCCNA_00889 and CCNA_00890 are separated by 90 nucleotidesCCNA_00890 and CCNA_00891 are separated by 121 nucleotides CCNA_00888: CCNA_00888 - MCP-signal associated domain protein, at 966,956 to 967,309 _00888 CCNA_00889: CCNA_00889 - lumazine-binding domain protein, at 967,313 to 967,756 _00889 CCNA_00890: CCNA_00890 - poly(3-hydroxyalkanoate) depolymerase, at 967,847 to 968,767 _00890 CCNA_00891: CCNA_00891 - transporter, drug/metabolite exporter family, at 968,889 to 969,827 _00891 Position (kb) 967 968 969Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 966.853 kb on + strandat 966.853 kb on + strandat 966.853 kb on + strandat 966.854 kb on + strandat 966.861 kb on - strandat 966.862 kb on - strandat 966.862 kb on - strandat 966.862 kb on - strandat 966.862 kb on - strandat 966.862 kb on - strandat 966.862 kb on - strandat 966.862 kb on - strandat 966.862 kb on - strandat 966.877 kb on + strandat 966.877 kb on + strandat 966.877 kb on + strandat 966.877 kb on + strandat 966.885 kb on - strandat 966.885 kb on - strandat 966.885 kb on - strandat 966.910 kb on + strandat 966.944 kb on - strandat 966.946 kb on + strandat 966.954 kb on - strandat 966.959 kb on + strandat 967.021 kb on - strand, within CCNA_00888at 967.022 kb on + strand, within CCNA_00888at 967.022 kb on + strand, within CCNA_00888at 967.024 kb on + strand, within CCNA_00888at 967.030 kb on - strand, within CCNA_00888at 967.032 kb on - strand, within CCNA_00888at 967.053 kb on + strand, within CCNA_00888at 967.066 kb on - strand, within CCNA_00888at 967.101 kb on + strand, within CCNA_00888at 967.138 kb on + strand, within CCNA_00888at 967.154 kb on - strand, within CCNA_00888at 967.259 kb on - strand, within CCNA_00888at 967.285 kb on + strandat 967.293 kb on - strandat 967.303 kb on + strandat 967.334 kb on - strandat 967.338 kb on + strandat 967.381 kb on + strand, within CCNA_00889at 967.488 kb on + strand, within CCNA_00889at 967.555 kb on - strand, within CCNA_00889at 967.555 kb on - strand, within CCNA_00889at 967.566 kb on - strand, within CCNA_00889at 967.569 kb on + strand, within CCNA_00889at 967.577 kb on - strand, within CCNA_00889at 967.587 kb on + strand, within CCNA_00889at 967.605 kb on - strand, within CCNA_00889at 967.635 kb on + strand, within CCNA_00889at 967.666 kb on - strand, within CCNA_00889at 967.680 kb on + strand, within CCNA_00889at 967.729 kb on + strandat 967.880 kb on + strandat 967.881 kb on + strandat 967.910 kb on + strandat 967.918 kb on - strandat 967.945 kb on - strand, within CCNA_00890at 967.978 kb on + strand, within CCNA_00890at 967.986 kb on - strand, within CCNA_00890at 967.986 kb on - strand, within CCNA_00890at 968.008 kb on - strand, within CCNA_00890at 968.028 kb on - strand, within CCNA_00890at 968.038 kb on - strand, within CCNA_00890at 968.040 kb on + strand, within CCNA_00890at 968.040 kb on + strand, within CCNA_00890at 968.048 kb on - strand, within CCNA_00890at 968.055 kb on + strand, within CCNA_00890at 968.072 kb on - strand, within CCNA_00890at 968.098 kb on + strand, within CCNA_00890at 968.098 kb on + strand, within CCNA_00890at 968.102 kb on + strand, within CCNA_00890at 968.106 kb on - strand, within CCNA_00890at 968.106 kb on - strand, within CCNA_00890at 968.132 kb on + strand, within CCNA_00890at 968.165 kb on - strand, within CCNA_00890at 968.168 kb on + strand, within CCNA_00890at 968.181 kb on - strand, within CCNA_00890at 968.186 kb on + strand, within CCNA_00890at 968.191 kb on + strand, within CCNA_00890at 968.199 kb on - strand, within CCNA_00890at 968.249 kb on + strand, within CCNA_00890at 968.249 kb on + strand, within CCNA_00890at 968.269 kb on + strand, within CCNA_00890at 968.297 kb on - strand, within CCNA_00890at 968.307 kb on + strand, within CCNA_00890at 968.307 kb on + strand, within CCNA_00890at 968.307 kb on + strand, within CCNA_00890at 968.312 kb on + strand, within CCNA_00890at 968.313 kb on + strand, within CCNA_00890at 968.323 kb on + strand, within CCNA_00890at 968.328 kb on + strand, within CCNA_00890at 968.328 kb on + strand, within CCNA_00890at 968.328 kb on + strand, within CCNA_00890at 968.333 kb on + strand, within CCNA_00890at 968.336 kb on - strandat 968.336 kb on - strand, within CCNA_00890at 968.341 kb on - strand, within CCNA_00890at 968.357 kb on - strand, within CCNA_00890at 968.370 kb on - strand, within CCNA_00890at 968.380 kb on - strand, within CCNA_00890at 968.386 kb on + strand, within CCNA_00890at 968.394 kb on + strand, within CCNA_00890at 968.424 kb on - strand, within CCNA_00890at 968.435 kb on - strand, within CCNA_00890at 968.441 kb on + strand, within CCNA_00890at 968.450 kb on - strand, within CCNA_00890at 968.526 kb on - strand, within CCNA_00890at 968.561 kb on + strand, within CCNA_00890at 968.566 kb on - strand, within CCNA_00890at 968.573 kb on + strand, within CCNA_00890at 968.629 kb on - strand, within CCNA_00890at 968.640 kb on - strand, within CCNA_00890at 968.663 kb on - strand, within CCNA_00890at 968.694 kb on - strandat 968.739 kb on + strandat 968.755 kb on + strandat 968.858 kb on - strandat 968.863 kb on - strandat 968.873 kb on + strandat 968.875 kb on + strandat 968.875 kb on + strandat 968.875 kb on + strandat 968.883 kb on - strandat 968.883 kb on - strandat 968.894 kb on - strandat 968.894 kb on - strandat 968.939 kb on - strandat 968.953 kb on - strandat 968.956 kb on + strandat 968.994 kb on + strand, within CCNA_00891at 968.997 kb on + strand, within CCNA_00891at 969.002 kb on + strand, within CCNA_00891at 969.010 kb on - strand, within CCNA_00891at 969.023 kb on + strand, within CCNA_00891at 969.031 kb on - strand, within CCNA_00891at 969.032 kb on - strand, within CCNA_00891at 969.061 kb on + strand, within CCNA_00891at 969.061 kb on + strand, within CCNA_00891at 969.061 kb on + strand, within CCNA_00891at 969.069 kb on - strand, within CCNA_00891at 969.106 kb on + strand, within CCNA_00891at 969.106 kb on + strand, within CCNA_00891at 969.114 kb on - strand, within CCNA_00891at 969.131 kb on - strand, within CCNA_00891at 969.147 kb on - strand, within CCNA_00891at 969.150 kb on + strand, within CCNA_00891at 969.150 kb on + strand, within CCNA_00891at 969.155 kb on + strand, within CCNA_00891at 969.158 kb on - strand, within CCNA_00891at 969.165 kb on + strand, within CCNA_00891at 969.168 kb on - strand, within CCNA_00891at 969.172 kb on + strand, within CCNA_00891at 969.183 kb on + strand, within CCNA_00891at 969.183 kb on + strand, within CCNA_00891at 969.183 kb on + strand, within CCNA_00891at 969.183 kb on + strand, within CCNA_00891at 969.186 kb on - strand, within CCNA_00891at 969.204 kb on + strand, within CCNA_00891at 969.220 kb on + strand, within CCNA_00891at 969.220 kb on + strand, within CCNA_00891at 969.233 kb on - strand, within CCNA_00891at 969.233 kb on - strand, within CCNA_00891at 969.251 kb on + strand, within CCNA_00891at 969.251 kb on + strand, within CCNA_00891at 969.258 kb on + strand, within CCNA_00891at 969.258 kb on + strandat 969.258 kb on + strand, within CCNA_00891at 969.259 kb on - strand, within CCNA_00891at 969.259 kb on - strand, within CCNA_00891at 969.266 kb on - strand, within CCNA_00891at 969.266 kb on - strand, within CCNA_00891at 969.266 kb on - strand, within CCNA_00891at 969.266 kb on - strand, within CCNA_00891at 969.266 kb on - strand, within CCNA_00891at 969.266 kb on - strand, within CCNA_00891at 969.272 kb on + strand, within CCNA_00891at 969.300 kb on + strand, within CCNA_00891at 969.310 kb on + strand, within CCNA_00891at 969.353 kb on + strand, within CCNA_00891at 969.361 kb on - strand, within CCNA_00891at 969.398 kb on + strand, within CCNA_00891at 969.398 kb on + strand, within CCNA_00891at 969.482 kb on - strand, within CCNA_00891at 969.487 kb on - strand, within CCNA_00891at 969.503 kb on - strandat 969.507 kb on - strand, within CCNA_00891at 969.509 kb on + strand, within CCNA_00891at 969.519 kb on + strand, within CCNA_00891at 969.527 kb on - strand, within CCNA_00891at 969.572 kb on + strand, within CCNA_00891at 969.572 kb on + strand, within CCNA_00891at 969.572 kb on + strand, within CCNA_00891at 969.572 kb on + strand, within CCNA_00891at 969.572 kb on + strand, within CCNA_00891at 969.580 kb on - strand, within CCNA_00891at 969.580 kb on - strand, within CCNA_00891at 969.580 kb on - strand, within CCNA_00891at 969.580 kb on - strand, within CCNA_00891at 969.587 kb on - strand, within CCNA_00891at 969.693 kb on + strand, within CCNA_00891at 969.704 kb on + strand, within CCNA_00891at 969.704 kb on + strand, within CCNA_00891at 969.712 kb on - strand, within CCNA_00891at 969.712 kb on - strand, within CCNA_00891at 969.712 kb on - strand, within CCNA_00891at 969.712 kb on - strand, within CCNA_00891at 969.712 kb on - strand, within CCNA_00891at 969.762 kb on + strandat 969.762 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin (C)
remove
966,853 + -1.2
966,853 + -0.8
966,853 + -2.5
966,854 + -0.8
966,861 - -1.5
966,862 - -0.2
966,862 - -1.0
966,862 - +1.6
966,862 - +1.9
966,862 - -0.6
966,862 - +2.1
966,862 - -0.2
966,862 - +0.0
966,877 + -0.1
966,877 + -0.5
966,877 + +1.8
966,877 + -0.2
966,885 - +0.3
966,885 - -0.5
966,885 - -1.8
966,910 + -0.4
966,944 - -1.2
966,946 + -1.0
966,954 - -0.3
966,959 + -2.5
967,021 - CCNA_00888 0.18 -2.0
967,022 + CCNA_00888 0.19 +1.4
967,022 + CCNA_00888 0.19 -0.3
967,024 + CCNA_00888 0.19 +0.9
967,030 - CCNA_00888 0.21 -0.4
967,032 - CCNA_00888 0.21 -1.8
967,053 + CCNA_00888 0.27 -1.3
967,066 - CCNA_00888 0.31 -0.1
967,101 + CCNA_00888 0.41 -1.6
967,138 + CCNA_00888 0.51 -0.9
967,154 - CCNA_00888 0.56 -0.5
967,259 - CCNA_00888 0.86 +0.8
967,285 + +0.5
967,293 - +1.5
967,303 + +1.9
967,334 - +0.1
967,338 + -1.1
967,381 + CCNA_00889 0.15 -1.6
967,488 + CCNA_00889 0.39 -1.1
967,555 - CCNA_00889 0.55 +2.5
967,555 - CCNA_00889 0.55 +0.1
967,566 - CCNA_00889 0.57 +1.2
967,569 + CCNA_00889 0.58 +0.8
967,577 - CCNA_00889 0.59 +0.7
967,587 + CCNA_00889 0.62 +3.2
967,605 - CCNA_00889 0.66 +1.4
967,635 + CCNA_00889 0.73 +1.5
967,666 - CCNA_00889 0.80 +0.1
967,680 + CCNA_00889 0.83 -0.6
967,729 + +0.4
967,880 + +1.3
967,881 + -1.0
967,910 + -0.7
967,918 - +2.5
967,945 - CCNA_00890 0.11 +2.8
967,978 + CCNA_00890 0.14 +0.2
967,986 - CCNA_00890 0.15 +0.5
967,986 - CCNA_00890 0.15 -1.0
968,008 - CCNA_00890 0.17 -0.1
968,028 - CCNA_00890 0.20 +1.1
968,038 - CCNA_00890 0.21 +1.5
968,040 + CCNA_00890 0.21 -0.3
968,040 + CCNA_00890 0.21 -0.4
968,048 - CCNA_00890 0.22 -3.1
968,055 + CCNA_00890 0.23 -0.7
968,072 - CCNA_00890 0.24 -0.6
968,098 + CCNA_00890 0.27 -0.4
968,098 + CCNA_00890 0.27 -0.9
968,102 + CCNA_00890 0.28 +0.8
968,106 - CCNA_00890 0.28 -2.6
968,106 - CCNA_00890 0.28 +0.4
968,132 + CCNA_00890 0.31 -2.3
968,165 - CCNA_00890 0.35 -0.6
968,168 + CCNA_00890 0.35 -1.1
968,181 - CCNA_00890 0.36 +1.3
968,186 + CCNA_00890 0.37 +0.2
968,191 + CCNA_00890 0.37 +0.7
968,199 - CCNA_00890 0.38 -0.5
968,249 + CCNA_00890 0.44 -1.3
968,249 + CCNA_00890 0.44 +0.3
968,269 + CCNA_00890 0.46 -0.2
968,297 - CCNA_00890 0.49 +0.7
968,307 + CCNA_00890 0.50 -1.0
968,307 + CCNA_00890 0.50 +0.0
968,307 + CCNA_00890 0.50 -0.4
968,312 + CCNA_00890 0.50 +1.8
968,313 + CCNA_00890 0.51 +0.9
968,323 + CCNA_00890 0.52 +0.5
968,328 + CCNA_00890 0.52 -0.0
968,328 + CCNA_00890 0.52 -0.3
968,328 + CCNA_00890 0.52 +0.8
968,333 + CCNA_00890 0.53 +2.5
968,336 - +1.9
968,336 - CCNA_00890 0.53 +0.9
968,341 - CCNA_00890 0.54 +2.0
968,357 - CCNA_00890 0.55 -1.7
968,370 - CCNA_00890 0.57 +0.6
968,380 - CCNA_00890 0.58 +0.4
968,386 + CCNA_00890 0.59 -0.6
968,394 + CCNA_00890 0.59 +0.0
968,424 - CCNA_00890 0.63 +2.2
968,435 - CCNA_00890 0.64 +1.5
968,441 + CCNA_00890 0.64 -1.2
968,450 - CCNA_00890 0.65 +2.8
968,526 - CCNA_00890 0.74 +0.5
968,561 + CCNA_00890 0.78 +0.1
968,566 - CCNA_00890 0.78 +1.1
968,573 + CCNA_00890 0.79 +0.2
968,629 - CCNA_00890 0.85 +0.9
968,640 - CCNA_00890 0.86 +1.2
968,663 - CCNA_00890 0.89 +0.7
968,694 - +0.0
968,739 + -1.0
968,755 + +1.8
968,858 - -0.1
968,863 - +0.6
968,873 + -0.9
968,875 + -1.9
968,875 + +0.3
968,875 + -0.9
968,883 - -1.2
968,883 - -1.5
968,894 - -3.1
968,894 - -0.3
968,939 - -0.9
968,953 - -3.4
968,956 + +0.2
968,994 + CCNA_00891 0.11 +0.1
968,997 + CCNA_00891 0.12 -0.8
969,002 + CCNA_00891 0.12 -2.1
969,010 - CCNA_00891 0.13 -1.1
969,023 + CCNA_00891 0.14 -0.3
969,031 - CCNA_00891 0.15 +2.4
969,032 - CCNA_00891 0.15 -0.3
969,061 + CCNA_00891 0.18 -3.0
969,061 + CCNA_00891 0.18 -1.4
969,061 + CCNA_00891 0.18 -1.9
969,069 - CCNA_00891 0.19 -0.1
969,106 + CCNA_00891 0.23 -0.5
969,106 + CCNA_00891 0.23 -2.6
969,114 - CCNA_00891 0.24 -0.6
969,131 - CCNA_00891 0.26 -1.1
969,147 - CCNA_00891 0.27 -1.5
969,150 + CCNA_00891 0.28 +2.1
969,150 + CCNA_00891 0.28 -1.2
969,155 + CCNA_00891 0.28 +1.2
969,158 - CCNA_00891 0.29 -2.4
969,165 + CCNA_00891 0.29 -0.3
969,168 - CCNA_00891 0.30 +1.6
969,172 + CCNA_00891 0.30 +0.1
969,183 + CCNA_00891 0.31 -0.9
969,183 + CCNA_00891 0.31 +0.4
969,183 + CCNA_00891 0.31 +0.3
969,183 + CCNA_00891 0.31 +1.3
969,186 - CCNA_00891 0.32 -0.3
969,204 + CCNA_00891 0.34 -0.3
969,220 + CCNA_00891 0.35 -0.8
969,220 + CCNA_00891 0.35 -0.3
969,233 - CCNA_00891 0.37 -0.8
969,233 - CCNA_00891 0.37 -0.3
969,251 + CCNA_00891 0.39 -1.8
969,251 + CCNA_00891 0.39 +0.6
969,258 + CCNA_00891 0.39 -0.4
969,258 + +1.3
969,258 + CCNA_00891 0.39 +0.9
969,259 - CCNA_00891 0.39 -0.2
969,259 - CCNA_00891 0.39 -1.6
969,266 - CCNA_00891 0.40 -2.4
969,266 - CCNA_00891 0.40 -0.3
969,266 - CCNA_00891 0.40 -1.0
969,266 - CCNA_00891 0.40 -0.1
969,266 - CCNA_00891 0.40 -0.4
969,266 - CCNA_00891 0.40 +0.1
969,272 + CCNA_00891 0.41 -3.2
969,300 + CCNA_00891 0.44 +0.8
969,310 + CCNA_00891 0.45 -0.7
969,353 + CCNA_00891 0.49 -0.5
969,361 - CCNA_00891 0.50 +1.5
969,398 + CCNA_00891 0.54 +1.7
969,398 + CCNA_00891 0.54 +0.6
969,482 - CCNA_00891 0.63 +3.8
969,487 - CCNA_00891 0.64 -0.8
969,503 - +2.1
969,507 - CCNA_00891 0.66 -1.3
969,509 + CCNA_00891 0.66 -0.1
969,519 + CCNA_00891 0.67 -2.2
969,527 - CCNA_00891 0.68 -3.0
969,572 + CCNA_00891 0.73 -0.6
969,572 + CCNA_00891 0.73 +1.7
969,572 + CCNA_00891 0.73 +0.1
969,572 + CCNA_00891 0.73 -3.1
969,572 + CCNA_00891 0.73 -1.0
969,580 - CCNA_00891 0.74 -2.3
969,580 - CCNA_00891 0.74 -0.4
969,580 - CCNA_00891 0.74 -2.3
969,580 - CCNA_00891 0.74 -0.6
969,587 - CCNA_00891 0.74 -0.8
969,693 + CCNA_00891 0.86 -1.9
969,704 + CCNA_00891 0.87 -1.1
969,704 + CCNA_00891 0.87 -2.1
969,712 - CCNA_00891 0.88 -0.4
969,712 - CCNA_00891 0.88 -1.1
969,712 - CCNA_00891 0.88 -2.0
969,712 - CCNA_00891 0.88 -0.4
969,712 - CCNA_00891 0.88 -1.2
969,762 + +0.1
969,762 + +0.8

Or see this region's nucleotide sequence