Experiment: a-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00810 and CCNA_00811 are separated by 31 nucleotides CCNA_00811 and CCNA_00812 are separated by 221 nucleotides CCNA_00812 and CCNA_00813 are separated by 128 nucleotides
CCNA_00810: CCNA_00810 - acetyl esterase, at 873,744 to 874,886
_00810
CCNA_00811: CCNA_00811 - TetR-family transcriptional regulator, at 874,918 to 875,553
_00811
CCNA_00812: CCNA_00812 - hypothetical protein, at 875,775 to 876,026
_00812
CCNA_00813: CCNA_00813 - flavin-binding monooxygenase-related protein, at 876,155 to 877,531
_00813
Position (kb) 874
875
876 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 873.918 kb on - strand, within CCNA_00810 at 873.940 kb on - strand, within CCNA_00810 at 874.043 kb on - strand, within CCNA_00810 at 874.061 kb on - strand, within CCNA_00810 at 874.061 kb on - strand, within CCNA_00810 at 874.068 kb on + strand, within CCNA_00810 at 874.116 kb on - strand, within CCNA_00810 at 874.127 kb on - strand, within CCNA_00810 at 874.132 kb on + strand, within CCNA_00810 at 874.137 kb on - strand, within CCNA_00810 at 874.145 kb on - strand, within CCNA_00810 at 874.145 kb on - strand, within CCNA_00810 at 874.151 kb on - strand, within CCNA_00810 at 874.151 kb on - strand, within CCNA_00810 at 874.161 kb on + strand, within CCNA_00810 at 874.168 kb on + strand, within CCNA_00810 at 874.267 kb on + strand, within CCNA_00810 at 874.267 kb on + strand, within CCNA_00810 at 874.269 kb on + strand, within CCNA_00810 at 874.269 kb on + strand, within CCNA_00810 at 874.305 kb on + strand, within CCNA_00810 at 874.344 kb on + strand, within CCNA_00810 at 874.359 kb on - strand, within CCNA_00810 at 874.364 kb on - strand, within CCNA_00810 at 874.385 kb on + strand, within CCNA_00810 at 874.393 kb on - strand, within CCNA_00810 at 874.397 kb on + strand, within CCNA_00810 at 874.408 kb on + strand, within CCNA_00810 at 874.443 kb on + strand, within CCNA_00810 at 874.451 kb on - strand, within CCNA_00810 at 874.462 kb on + strand, within CCNA_00810 at 874.473 kb on + strand, within CCNA_00810 at 874.481 kb on - strand, within CCNA_00810 at 874.492 kb on - strand, within CCNA_00810 at 874.532 kb on + strand, within CCNA_00810 at 874.583 kb on - strand, within CCNA_00810 at 874.673 kb on + strand, within CCNA_00810 at 874.673 kb on + strand, within CCNA_00810 at 874.673 kb on + strand, within CCNA_00810 at 874.681 kb on - strand, within CCNA_00810 at 874.681 kb on - strand, within CCNA_00810 at 874.681 kb on - strand, within CCNA_00810 at 874.681 kb on - strand, within CCNA_00810 at 874.681 kb on - strand, within CCNA_00810 at 874.687 kb on - strand, within CCNA_00810 at 874.727 kb on + strand, within CCNA_00810 at 874.735 kb on - strand, within CCNA_00810 at 874.737 kb on + strand, within CCNA_00810 at 874.744 kb on + strand, within CCNA_00810 at 874.746 kb on - strand, within CCNA_00810 at 874.752 kb on - strand, within CCNA_00810 at 874.775 kb on - strand at 874.805 kb on + strand at 874.824 kb on + strand at 874.824 kb on + strand at 874.824 kb on + strand at 874.824 kb on + strand at 874.832 kb on - strand at 874.832 kb on - strand at 874.832 kb on - strand at 874.832 kb on - strand at 874.832 kb on - strand at 874.832 kb on - strand at 874.832 kb on - strand at 874.832 kb on - strand at 874.842 kb on - strand at 874.862 kb on + strand at 874.884 kb on + strand at 874.924 kb on - strand at 874.924 kb on - strand at 874.924 kb on - strand at 874.924 kb on - strand at 874.924 kb on - strand at 874.927 kb on + strand at 874.956 kb on + strand at 874.966 kb on + strand at 875.068 kb on + strand, within CCNA_00811 at 875.097 kb on - strand, within CCNA_00811 at 875.101 kb on + strand, within CCNA_00811 at 875.109 kb on - strand, within CCNA_00811 at 875.109 kb on - strand, within CCNA_00811 at 875.109 kb on - strand, within CCNA_00811 at 875.109 kb on - strand, within CCNA_00811 at 875.122 kb on + strand, within CCNA_00811 at 875.128 kb on - strand, within CCNA_00811 at 875.137 kb on - strand, within CCNA_00811 at 875.150 kb on + strand, within CCNA_00811 at 875.193 kb on - strand, within CCNA_00811 at 875.230 kb on + strand, within CCNA_00811 at 875.238 kb on - strand, within CCNA_00811 at 875.243 kb on - strand, within CCNA_00811 at 875.279 kb on - strand, within CCNA_00811 at 875.281 kb on - strand, within CCNA_00811 at 875.372 kb on - strand, within CCNA_00811 at 875.380 kb on + strand, within CCNA_00811 at 875.380 kb on + strand, within CCNA_00811 at 875.388 kb on - strand, within CCNA_00811 at 875.388 kb on - strand, within CCNA_00811 at 875.388 kb on - strand, within CCNA_00811 at 875.410 kb on + strand, within CCNA_00811 at 875.412 kb on - strand, within CCNA_00811 at 875.412 kb on - strand, within CCNA_00811 at 875.422 kb on + strand, within CCNA_00811 at 875.428 kb on + strand, within CCNA_00811 at 875.491 kb on - strand at 875.501 kb on - strand at 875.504 kb on + strand at 875.516 kb on - strand at 875.519 kb on + strand at 875.526 kb on - strand at 875.608 kb on + strand at 875.611 kb on - strand at 875.685 kb on - strand at 875.690 kb on + strand at 875.690 kb on + strand at 875.691 kb on + strand at 875.692 kb on - strand at 875.698 kb on - strand at 875.715 kb on + strand at 875.715 kb on + strand at 875.717 kb on + strand at 875.717 kb on + strand at 875.717 kb on + strand at 875.717 kb on + strand at 875.717 kb on + strand at 875.723 kb on - strand at 875.725 kb on - strand at 875.725 kb on - strand at 875.725 kb on - strand at 875.731 kb on - strand at 875.760 kb on + strand at 875.768 kb on - strand at 875.768 kb on - strand at 875.768 kb on - strand at 875.802 kb on + strand, within CCNA_00812 at 875.810 kb on - strand, within CCNA_00812 at 875.841 kb on + strand, within CCNA_00812 at 875.841 kb on + strand, within CCNA_00812 at 875.841 kb on + strand, within CCNA_00812 at 875.841 kb on + strand, within CCNA_00812 at 875.841 kb on + strand, within CCNA_00812 at 875.841 kb on + strand, within CCNA_00812 at 875.841 kb on + strand, within CCNA_00812 at 875.841 kb on + strand, within CCNA_00812 at 875.841 kb on + strand, within CCNA_00812 at 875.841 kb on + strand, within CCNA_00812 at 875.841 kb on + strand, within CCNA_00812 at 875.841 kb on + strand, within CCNA_00812 at 875.841 kb on + strand, within CCNA_00812 at 875.841 kb on + strand, within CCNA_00812 at 875.841 kb on + strand, within CCNA_00812 at 875.846 kb on + strand, within CCNA_00812 at 875.846 kb on + strand, within CCNA_00812 at 875.849 kb on - strand, within CCNA_00812 at 875.849 kb on - strand, within CCNA_00812 at 875.849 kb on - strand, within CCNA_00812 at 875.849 kb on - strand, within CCNA_00812 at 875.849 kb on - strand, within CCNA_00812 at 875.849 kb on - strand, within CCNA_00812 at 875.849 kb on - strand, within CCNA_00812 at 875.849 kb on - strand, within CCNA_00812 at 875.849 kb on - strand, within CCNA_00812 at 875.849 kb on - strand, within CCNA_00812 at 875.849 kb on - strand, within CCNA_00812 at 875.849 kb on - strand, within CCNA_00812 at 875.849 kb on - strand, within CCNA_00812 at 875.849 kb on - strand, within CCNA_00812 at 875.849 kb on - strand, within CCNA_00812 at 875.849 kb on - strand, within CCNA_00812 at 875.854 kb on - strand, within CCNA_00812 at 875.870 kb on + strand, within CCNA_00812 at 875.872 kb on - strand, within CCNA_00812 at 875.878 kb on - strand, within CCNA_00812 at 875.878 kb on - strand, within CCNA_00812 at 875.901 kb on + strand, within CCNA_00812 at 875.901 kb on + strand, within CCNA_00812 at 875.912 kb on + strand, within CCNA_00812 at 875.940 kb on - strand, within CCNA_00812 at 875.987 kb on + strand, within CCNA_00812 at 875.995 kb on - strand, within CCNA_00812 at 875.995 kb on - strand, within CCNA_00812 at 876.015 kb on + strand at 876.054 kb on - strand at 876.063 kb on + strand at 876.068 kb on + strand at 876.071 kb on - strand at 876.071 kb on - strand at 876.075 kb on + strand at 876.101 kb on - strand at 876.115 kb on + strand at 876.120 kb on + strand at 876.123 kb on - strand at 876.123 kb on - strand at 876.125 kb on + strand at 876.135 kb on + strand at 876.171 kb on + strand at 876.178 kb on - strand at 876.179 kb on - strand at 876.195 kb on + strand at 876.210 kb on + strand at 876.241 kb on - strand at 876.269 kb on - strand at 876.321 kb on + strand, within CCNA_00813 at 876.368 kb on + strand, within CCNA_00813 at 876.370 kb on + strand, within CCNA_00813 at 876.376 kb on - strand, within CCNA_00813 at 876.376 kb on - strand, within CCNA_00813 at 876.384 kb on + strand, within CCNA_00813 at 876.448 kb on - strand, within CCNA_00813 at 876.448 kb on - strand, within CCNA_00813 at 876.450 kb on + strand, within CCNA_00813 at 876.452 kb on - strand, within CCNA_00813 at 876.461 kb on + strand, within CCNA_00813 at 876.465 kb on + strand, within CCNA_00813 at 876.483 kb on - strand, within CCNA_00813 at 876.484 kb on - strand, within CCNA_00813 at 876.511 kb on + strand, within CCNA_00813 at 876.536 kb on + strand, within CCNA_00813 at 876.536 kb on - strand, within CCNA_00813 at 876.549 kb on - strand, within CCNA_00813
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin (C) remove 873,918 - CCNA_00810 0.15 -0.9 873,940 - CCNA_00810 0.17 -0.6 874,043 - CCNA_00810 0.26 -1.0 874,061 - CCNA_00810 0.28 +0.4 874,061 - CCNA_00810 0.28 +2.3 874,068 + CCNA_00810 0.28 -0.5 874,116 - CCNA_00810 0.33 +0.5 874,127 - CCNA_00810 0.34 -0.9 874,132 + CCNA_00810 0.34 -1.0 874,137 - CCNA_00810 0.34 -1.3 874,145 - CCNA_00810 0.35 -0.7 874,145 - CCNA_00810 0.35 -2.4 874,151 - CCNA_00810 0.36 -0.3 874,151 - CCNA_00810 0.36 -2.5 874,161 + CCNA_00810 0.36 -1.4 874,168 + CCNA_00810 0.37 -2.3 874,267 + CCNA_00810 0.46 -3.7 874,267 + CCNA_00810 0.46 -0.1 874,269 + CCNA_00810 0.46 -1.6 874,269 + CCNA_00810 0.46 -1.6 874,305 + CCNA_00810 0.49 -1.2 874,344 + CCNA_00810 0.52 -1.0 874,359 - CCNA_00810 0.54 -0.1 874,364 - CCNA_00810 0.54 -0.3 874,385 + CCNA_00810 0.56 -1.0 874,393 - CCNA_00810 0.57 -0.5 874,397 + CCNA_00810 0.57 -0.3 874,408 + CCNA_00810 0.58 -0.3 874,443 + CCNA_00810 0.61 -1.7 874,451 - CCNA_00810 0.62 +0.8 874,462 + CCNA_00810 0.63 -0.5 874,473 + CCNA_00810 0.64 -1.5 874,481 - CCNA_00810 0.64 -0.7 874,492 - CCNA_00810 0.65 -2.7 874,532 + CCNA_00810 0.69 -1.9 874,583 - CCNA_00810 0.73 +1.0 874,673 + CCNA_00810 0.81 -1.9 874,673 + CCNA_00810 0.81 -1.2 874,673 + CCNA_00810 0.81 -2.1 874,681 - CCNA_00810 0.82 +0.4 874,681 - CCNA_00810 0.82 +1.0 874,681 - CCNA_00810 0.82 +0.5 874,681 - CCNA_00810 0.82 -0.9 874,681 - CCNA_00810 0.82 -1.5 874,687 - CCNA_00810 0.83 +1.0 874,727 + CCNA_00810 0.86 +0.9 874,735 - CCNA_00810 0.87 -1.1 874,737 + CCNA_00810 0.87 -1.2 874,744 + CCNA_00810 0.87 -0.1 874,746 - CCNA_00810 0.88 -2.6 874,752 - CCNA_00810 0.88 -0.8 874,775 - +0.2 874,805 + +1.5 874,824 + +0.1 874,824 + +0.7 874,824 + +0.2 874,824 + -0.7 874,832 - -0.9 874,832 - +0.1 874,832 - +0.2 874,832 - +0.4 874,832 - +0.9 874,832 - +1.1 874,832 - +0.2 874,832 - +0.4 874,842 - +2.0 874,862 + +2.3 874,884 + +0.6 874,924 - +1.9 874,924 - +1.3 874,924 - +1.2 874,924 - +1.6 874,924 - +0.3 874,927 + -2.0 874,956 + -1.8 874,966 + -1.3 875,068 + CCNA_00811 0.24 -0.3 875,097 - CCNA_00811 0.28 +1.5 875,101 + CCNA_00811 0.29 -1.0 875,109 - CCNA_00811 0.30 +1.0 875,109 - CCNA_00811 0.30 +1.3 875,109 - CCNA_00811 0.30 +1.6 875,109 - CCNA_00811 0.30 +2.0 875,122 + CCNA_00811 0.32 -1.1 875,128 - CCNA_00811 0.33 +2.0 875,137 - CCNA_00811 0.34 +1.3 875,150 + CCNA_00811 0.36 +0.2 875,193 - CCNA_00811 0.43 +2.0 875,230 + CCNA_00811 0.49 -1.8 875,238 - CCNA_00811 0.50 +1.8 875,243 - CCNA_00811 0.51 +1.6 875,279 - CCNA_00811 0.57 +0.7 875,281 - CCNA_00811 0.57 +1.6 875,372 - CCNA_00811 0.71 +1.9 875,380 + CCNA_00811 0.73 -0.8 875,380 + CCNA_00811 0.73 -1.4 875,388 - CCNA_00811 0.74 +0.5 875,388 - CCNA_00811 0.74 +1.0 875,388 - CCNA_00811 0.74 +1.2 875,410 + CCNA_00811 0.77 -1.1 875,412 - CCNA_00811 0.78 +1.4 875,412 - CCNA_00811 0.78 -0.1 875,422 + CCNA_00811 0.79 -1.8 875,428 + CCNA_00811 0.80 -1.9 875,491 - +0.3 875,501 - +0.7 875,504 + +0.9 875,516 - +1.5 875,519 + +0.6 875,526 - +1.4 875,608 + +1.0 875,611 - +0.4 875,685 - -0.4 875,690 + +0.3 875,690 + +0.6 875,691 + -0.4 875,692 - -2.5 875,698 - +0.7 875,715 + -2.4 875,715 + -1.7 875,717 + -0.5 875,717 + -1.8 875,717 + -1.1 875,717 + -1.6 875,717 + -3.2 875,723 - -1.7 875,725 - +0.0 875,725 - -0.6 875,725 - -2.9 875,731 - -1.1 875,760 + +1.7 875,768 - +0.8 875,768 - -1.0 875,768 - +2.0 875,802 + CCNA_00812 0.11 +2.2 875,810 - CCNA_00812 0.14 -0.8 875,841 + CCNA_00812 0.26 -0.3 875,841 + CCNA_00812 0.26 -0.2 875,841 + CCNA_00812 0.26 +0.8 875,841 + CCNA_00812 0.26 -1.1 875,841 + CCNA_00812 0.26 -0.9 875,841 + CCNA_00812 0.26 -1.3 875,841 + CCNA_00812 0.26 -1.9 875,841 + CCNA_00812 0.26 -2.2 875,841 + CCNA_00812 0.26 -0.8 875,841 + CCNA_00812 0.26 +0.8 875,841 + CCNA_00812 0.26 -1.9 875,841 + CCNA_00812 0.26 +1.2 875,841 + CCNA_00812 0.26 -0.3 875,841 + CCNA_00812 0.26 +0.2 875,841 + CCNA_00812 0.26 -2.3 875,846 + CCNA_00812 0.28 +0.3 875,846 + CCNA_00812 0.28 -0.4 875,849 - CCNA_00812 0.29 -0.4 875,849 - CCNA_00812 0.29 -0.3 875,849 - CCNA_00812 0.29 +0.4 875,849 - CCNA_00812 0.29 -0.2 875,849 - CCNA_00812 0.29 +1.4 875,849 - CCNA_00812 0.29 +0.0 875,849 - CCNA_00812 0.29 -0.1 875,849 - CCNA_00812 0.29 -2.2 875,849 - CCNA_00812 0.29 -0.2 875,849 - CCNA_00812 0.29 +0.5 875,849 - CCNA_00812 0.29 +0.3 875,849 - CCNA_00812 0.29 +1.7 875,849 - CCNA_00812 0.29 +0.2 875,849 - CCNA_00812 0.29 -0.5 875,849 - CCNA_00812 0.29 +0.1 875,849 - CCNA_00812 0.29 +0.2 875,854 - CCNA_00812 0.31 -1.1 875,870 + CCNA_00812 0.38 -1.6 875,872 - CCNA_00812 0.38 +0.2 875,878 - CCNA_00812 0.41 +0.4 875,878 - CCNA_00812 0.41 -1.7 875,901 + CCNA_00812 0.50 +0.2 875,901 + CCNA_00812 0.50 -1.5 875,912 + CCNA_00812 0.54 -1.2 875,940 - CCNA_00812 0.65 +0.4 875,987 + CCNA_00812 0.84 +1.1 875,995 - CCNA_00812 0.87 -0.6 875,995 - CCNA_00812 0.87 +1.9 876,015 + -1.0 876,054 - +1.8 876,063 + -0.8 876,068 + -0.3 876,071 - -2.1 876,071 - +0.0 876,075 + +0.8 876,101 - -1.8 876,115 + -0.4 876,120 + -1.8 876,123 - +1.8 876,123 - +1.3 876,125 + -1.7 876,135 + -0.8 876,171 + -0.1 876,178 - +2.0 876,179 - +0.2 876,195 + -0.7 876,210 + +1.0 876,241 - +0.2 876,269 - -1.3 876,321 + CCNA_00813 0.12 -0.4 876,368 + CCNA_00813 0.15 -0.1 876,370 + CCNA_00813 0.16 -0.4 876,376 - CCNA_00813 0.16 -1.3 876,376 - CCNA_00813 0.16 -1.7 876,384 + CCNA_00813 0.17 -1.3 876,448 - CCNA_00813 0.21 -1.1 876,448 - CCNA_00813 0.21 -2.0 876,450 + CCNA_00813 0.21 -1.4 876,452 - CCNA_00813 0.22 -1.4 876,461 + CCNA_00813 0.22 -0.8 876,465 + CCNA_00813 0.23 -1.3 876,483 - CCNA_00813 0.24 -0.3 876,484 - CCNA_00813 0.24 +2.2 876,511 + CCNA_00813 0.26 +1.8 876,536 + CCNA_00813 0.28 -0.3 876,536 - CCNA_00813 0.28 -3.1 876,549 - CCNA_00813 0.29 -1.4
Or see this region's nucleotide sequence