Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00558

Experiment: a-Cyclodextrin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00556 and CCNA_00557 overlap by 44 nucleotidesCCNA_00557 and CCNA_00558 overlap by 4 nucleotidesCCNA_00558 and CCNA_00559 are separated by 127 nucleotides CCNA_00556: CCNA_00556 - phospholipase D, at 571,546 to 573,063 _00556 CCNA_00557: CCNA_00557 - endonuclease/exonuclease/phosphatase family protein, at 573,020 to 573,799 _00557 CCNA_00558: CCNA_00558 - methyltransferase, at 573,796 to 574,461 _00558 CCNA_00559: CCNA_00559 - homoserine O-acetyltransferase, at 574,589 to 575,737 _00559 Position (kb) 573 574 575Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 572.809 kb on + strand, within CCNA_00556at 572.864 kb on + strand, within CCNA_00556at 572.897 kb on + strand, within CCNA_00556at 572.910 kb on - strand, within CCNA_00556at 572.912 kb on + strandat 572.922 kb on + strandat 572.925 kb on - strandat 573.026 kb on - strandat 573.091 kb on - strandat 573.142 kb on + strand, within CCNA_00557at 573.199 kb on - strand, within CCNA_00557at 573.216 kb on + strand, within CCNA_00557at 573.226 kb on + strand, within CCNA_00557at 573.227 kb on + strand, within CCNA_00557at 573.234 kb on + strand, within CCNA_00557at 573.238 kb on + strand, within CCNA_00557at 573.249 kb on - strand, within CCNA_00557at 573.254 kb on - strand, within CCNA_00557at 573.261 kb on + strand, within CCNA_00557at 573.290 kb on - strand, within CCNA_00557at 573.305 kb on - strand, within CCNA_00557at 573.305 kb on - strand, within CCNA_00557at 573.328 kb on + strand, within CCNA_00557at 573.329 kb on + strand, within CCNA_00557at 573.329 kb on + strand, within CCNA_00557at 573.330 kb on + strand, within CCNA_00557at 573.337 kb on - strand, within CCNA_00557at 573.396 kb on - strand, within CCNA_00557at 573.404 kb on + strand, within CCNA_00557at 573.411 kb on - strand, within CCNA_00557at 573.431 kb on - strand, within CCNA_00557at 573.445 kb on + strand, within CCNA_00557at 573.465 kb on + strand, within CCNA_00557at 573.475 kb on + strand, within CCNA_00557at 573.475 kb on + strand, within CCNA_00557at 573.483 kb on - strand, within CCNA_00557at 573.483 kb on - strand, within CCNA_00557at 573.483 kb on - strand, within CCNA_00557at 573.510 kb on + strand, within CCNA_00557at 573.517 kb on - strand, within CCNA_00557at 573.517 kb on - strand, within CCNA_00557at 573.517 kb on - strand, within CCNA_00557at 573.524 kb on + strand, within CCNA_00557at 573.565 kb on + strand, within CCNA_00557at 573.566 kb on - strand, within CCNA_00557at 573.566 kb on - strand, within CCNA_00557at 573.566 kb on - strand, within CCNA_00557at 573.566 kb on - strand, within CCNA_00557at 573.586 kb on - strand, within CCNA_00557at 573.595 kb on + strand, within CCNA_00557at 573.629 kb on - strand, within CCNA_00557at 573.635 kb on - strand, within CCNA_00557at 573.635 kb on - strand, within CCNA_00557at 573.637 kb on + strand, within CCNA_00557at 573.645 kb on - strand, within CCNA_00557at 573.721 kb on - strand, within CCNA_00557at 573.738 kb on + strandat 573.740 kb on - strandat 573.761 kb on + strandat 573.769 kb on - strandat 573.769 kb on - strandat 573.769 kb on - strandat 573.770 kb on + strandat 573.792 kb on + strandat 573.839 kb on - strandat 573.897 kb on + strand, within CCNA_00558at 573.912 kb on + strand, within CCNA_00558at 573.915 kb on - strand, within CCNA_00558at 573.969 kb on + strand, within CCNA_00558at 573.985 kb on - strand, within CCNA_00558at 573.990 kb on - strand, within CCNA_00558at 574.003 kb on - strand, within CCNA_00558at 574.007 kb on + strand, within CCNA_00558at 574.007 kb on + strand, within CCNA_00558at 574.015 kb on - strand, within CCNA_00558at 574.015 kb on - strand, within CCNA_00558at 574.015 kb on - strand, within CCNA_00558at 574.015 kb on - strand, within CCNA_00558at 574.015 kb on - strand, within CCNA_00558at 574.039 kb on + strand, within CCNA_00558at 574.039 kb on + strand, within CCNA_00558at 574.040 kb on + strand, within CCNA_00558at 574.053 kb on - strand, within CCNA_00558at 574.078 kb on + strand, within CCNA_00558at 574.078 kb on + strand, within CCNA_00558at 574.078 kb on + strand, within CCNA_00558at 574.078 kb on + strand, within CCNA_00558at 574.078 kb on + strand, within CCNA_00558at 574.086 kb on - strand, within CCNA_00558at 574.086 kb on - strand, within CCNA_00558at 574.086 kb on - strand, within CCNA_00558at 574.086 kb on - strand, within CCNA_00558at 574.086 kb on - strand, within CCNA_00558at 574.093 kb on + strand, within CCNA_00558at 574.122 kb on - strand, within CCNA_00558at 574.196 kb on + strand, within CCNA_00558at 574.204 kb on - strand, within CCNA_00558at 574.204 kb on - strand, within CCNA_00558at 574.204 kb on - strand, within CCNA_00558at 574.204 kb on - strand, within CCNA_00558at 574.204 kb on - strand, within CCNA_00558at 574.246 kb on + strand, within CCNA_00558at 574.256 kb on + strand, within CCNA_00558at 574.259 kb on - strand, within CCNA_00558at 574.264 kb on - strand, within CCNA_00558at 574.297 kb on - strand, within CCNA_00558at 574.305 kb on - strand, within CCNA_00558at 574.339 kb on - strand, within CCNA_00558at 574.381 kb on - strand, within CCNA_00558at 574.420 kb on + strandat 574.446 kb on + strandat 574.447 kb on + strandat 574.447 kb on + strandat 574.454 kb on - strandat 574.501 kb on - strandat 574.501 kb on - strandat 574.510 kb on + strandat 574.567 kb on - strandat 574.587 kb on + strandat 574.759 kb on - strand, within CCNA_00559at 574.759 kb on - strand, within CCNA_00559at 574.773 kb on - strand, within CCNA_00559at 574.790 kb on - strand, within CCNA_00559at 574.795 kb on - strand, within CCNA_00559at 574.815 kb on - strand, within CCNA_00559at 574.818 kb on + strand, within CCNA_00559at 574.820 kb on + strand, within CCNA_00559at 574.828 kb on - strand, within CCNA_00559at 574.832 kb on + strand, within CCNA_00559at 574.892 kb on - strand, within CCNA_00559at 574.913 kb on + strand, within CCNA_00559at 574.925 kb on + strand, within CCNA_00559at 574.933 kb on - strand, within CCNA_00559at 574.956 kb on + strand, within CCNA_00559at 574.976 kb on + strand, within CCNA_00559at 574.977 kb on + strand, within CCNA_00559at 574.977 kb on + strand, within CCNA_00559at 575.051 kb on - strand, within CCNA_00559at 575.080 kb on - strand, within CCNA_00559at 575.150 kb on + strand, within CCNA_00559at 575.174 kb on + strand, within CCNA_00559at 575.174 kb on + strand, within CCNA_00559at 575.174 kb on + strand, within CCNA_00559at 575.174 kb on + strand, within CCNA_00559at 575.174 kb on + strandat 575.174 kb on + strand, within CCNA_00559at 575.174 kb on + strand, within CCNA_00559at 575.174 kb on + strand, within CCNA_00559at 575.182 kb on - strand, within CCNA_00559at 575.182 kb on - strand, within CCNA_00559at 575.182 kb on - strand, within CCNA_00559at 575.182 kb on - strand, within CCNA_00559at 575.182 kb on - strand, within CCNA_00559at 575.182 kb on - strand, within CCNA_00559at 575.182 kb on - strand, within CCNA_00559at 575.182 kb on - strand, within CCNA_00559at 575.196 kb on + strand, within CCNA_00559at 575.217 kb on - strand, within CCNA_00559at 575.222 kb on - strand, within CCNA_00559at 575.222 kb on - strand, within CCNA_00559at 575.222 kb on - strand, within CCNA_00559at 575.235 kb on - strand, within CCNA_00559at 575.240 kb on - strand, within CCNA_00559at 575.244 kb on + strand, within CCNA_00559at 575.245 kb on - strand, within CCNA_00559at 575.249 kb on + strand, within CCNA_00559at 575.250 kb on + strand, within CCNA_00559at 575.265 kb on - strand, within CCNA_00559at 575.305 kb on - strand, within CCNA_00559at 575.313 kb on + strand, within CCNA_00559at 575.328 kb on + strand, within CCNA_00559at 575.336 kb on - strand, within CCNA_00559at 575.354 kb on + strand, within CCNA_00559at 575.354 kb on + strand, within CCNA_00559at 575.362 kb on - strand, within CCNA_00559at 575.374 kb on + strand, within CCNA_00559at 575.382 kb on - strand, within CCNA_00559at 575.382 kb on - strand, within CCNA_00559at 575.384 kb on - strand, within CCNA_00559at 575.389 kb on - strand, within CCNA_00559at 575.410 kb on - strand, within CCNA_00559at 575.410 kb on - strand, within CCNA_00559at 575.410 kb on - strand, within CCNA_00559at 575.451 kb on - strand, within CCNA_00559

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin (C)
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572,809 + CCNA_00556 0.83 +1.8
572,864 + CCNA_00556 0.87 +0.7
572,897 + CCNA_00556 0.89 -1.2
572,910 - CCNA_00556 0.90 -1.6
572,912 + +0.3
572,922 + +0.6
572,925 - -1.2
573,026 - -0.6
573,091 - +0.3
573,142 + CCNA_00557 0.16 -0.4
573,199 - CCNA_00557 0.23 +1.2
573,216 + CCNA_00557 0.25 -0.6
573,226 + CCNA_00557 0.26 +0.2
573,227 + CCNA_00557 0.27 +1.4
573,234 + CCNA_00557 0.27 -0.1
573,238 + CCNA_00557 0.28 -0.3
573,249 - CCNA_00557 0.29 -0.4
573,254 - CCNA_00557 0.30 -0.3
573,261 + CCNA_00557 0.31 -0.5
573,290 - CCNA_00557 0.35 +0.3
573,305 - CCNA_00557 0.37 +2.3
573,305 - CCNA_00557 0.37 +0.3
573,328 + CCNA_00557 0.39 +0.4
573,329 + CCNA_00557 0.40 +1.0
573,329 + CCNA_00557 0.40 -0.8
573,330 + CCNA_00557 0.40 +0.6
573,337 - CCNA_00557 0.41 +0.2
573,396 - CCNA_00557 0.48 +1.7
573,404 + CCNA_00557 0.49 +1.0
573,411 - CCNA_00557 0.50 +0.1
573,431 - CCNA_00557 0.53 +1.2
573,445 + CCNA_00557 0.54 -0.3
573,465 + CCNA_00557 0.57 -0.9
573,475 + CCNA_00557 0.58 -0.8
573,475 + CCNA_00557 0.58 -0.4
573,483 - CCNA_00557 0.59 +0.2
573,483 - CCNA_00557 0.59 +0.5
573,483 - CCNA_00557 0.59 -0.9
573,510 + CCNA_00557 0.63 +0.7
573,517 - CCNA_00557 0.64 +0.2
573,517 - CCNA_00557 0.64 +0.7
573,517 - CCNA_00557 0.64 +1.3
573,524 + CCNA_00557 0.65 +2.1
573,565 + CCNA_00557 0.70 +0.9
573,566 - CCNA_00557 0.70 +0.2
573,566 - CCNA_00557 0.70 +1.7
573,566 - CCNA_00557 0.70 +1.7
573,566 - CCNA_00557 0.70 +0.9
573,586 - CCNA_00557 0.73 +1.0
573,595 + CCNA_00557 0.74 -0.1
573,629 - CCNA_00557 0.78 +1.4
573,635 - CCNA_00557 0.79 +0.4
573,635 - CCNA_00557 0.79 +2.1
573,637 + CCNA_00557 0.79 +0.6
573,645 - CCNA_00557 0.80 +0.7
573,721 - CCNA_00557 0.90 +1.4
573,738 + +0.3
573,740 - -0.7
573,761 + -0.8
573,769 - +1.2
573,769 - -0.0
573,769 - +1.2
573,770 + +2.3
573,792 + -1.5
573,839 - -2.2
573,897 + CCNA_00558 0.15 -0.8
573,912 + CCNA_00558 0.17 -2.2
573,915 - CCNA_00558 0.18 -4.0
573,969 + CCNA_00558 0.26 +0.2
573,985 - CCNA_00558 0.28 -2.7
573,990 - CCNA_00558 0.29 -3.1
574,003 - CCNA_00558 0.31 -1.8
574,007 + CCNA_00558 0.32 +1.7
574,007 + CCNA_00558 0.32 -2.1
574,015 - CCNA_00558 0.33 -2.9
574,015 - CCNA_00558 0.33 -1.7
574,015 - CCNA_00558 0.33 +1.0
574,015 - CCNA_00558 0.33 -1.6
574,015 - CCNA_00558 0.33 -3.8
574,039 + CCNA_00558 0.36 -0.5
574,039 + CCNA_00558 0.36 +0.5
574,040 + CCNA_00558 0.37 -1.7
574,053 - CCNA_00558 0.39 -1.5
574,078 + CCNA_00558 0.42 -2.7
574,078 + CCNA_00558 0.42 -2.5
574,078 + CCNA_00558 0.42 -1.0
574,078 + CCNA_00558 0.42 -1.4
574,078 + CCNA_00558 0.42 -1.2
574,086 - CCNA_00558 0.44 -0.4
574,086 - CCNA_00558 0.44 -3.0
574,086 - CCNA_00558 0.44 -1.1
574,086 - CCNA_00558 0.44 -2.5
574,086 - CCNA_00558 0.44 -3.0
574,093 + CCNA_00558 0.45 +2.3
574,122 - CCNA_00558 0.49 -1.4
574,196 + CCNA_00558 0.60 -2.1
574,204 - CCNA_00558 0.61 -2.8
574,204 - CCNA_00558 0.61 -0.0
574,204 - CCNA_00558 0.61 -0.8
574,204 - CCNA_00558 0.61 -4.6
574,204 - CCNA_00558 0.61 -2.2
574,246 + CCNA_00558 0.68 -1.6
574,256 + CCNA_00558 0.69 -2.0
574,259 - CCNA_00558 0.70 -1.1
574,264 - CCNA_00558 0.70 -2.2
574,297 - CCNA_00558 0.75 -1.2
574,305 - CCNA_00558 0.76 -3.4
574,339 - CCNA_00558 0.82 -2.4
574,381 - CCNA_00558 0.88 -3.8
574,420 + -1.6
574,446 + -0.5
574,447 + -2.8
574,447 + -1.5
574,454 - -2.4
574,501 - +0.9
574,501 - +1.3
574,510 + -0.4
574,567 - +2.1
574,587 + -1.1
574,759 - CCNA_00559 0.15 -3.9
574,759 - CCNA_00559 0.15 -2.6
574,773 - CCNA_00559 0.16 -4.0
574,790 - CCNA_00559 0.17 -3.8
574,795 - CCNA_00559 0.18 -2.9
574,815 - CCNA_00559 0.20 -2.7
574,818 + CCNA_00559 0.20 -1.1
574,820 + CCNA_00559 0.20 -1.0
574,828 - CCNA_00559 0.21 -2.5
574,832 + CCNA_00559 0.21 -0.0
574,892 - CCNA_00559 0.26 -0.7
574,913 + CCNA_00559 0.28 -0.9
574,925 + CCNA_00559 0.29 -1.4
574,933 - CCNA_00559 0.30 -0.0
574,956 + CCNA_00559 0.32 -1.6
574,976 + CCNA_00559 0.34 -1.4
574,977 + CCNA_00559 0.34 -0.7
574,977 + CCNA_00559 0.34 +0.5
575,051 - CCNA_00559 0.40 -2.5
575,080 - CCNA_00559 0.43 -1.6
575,150 + CCNA_00559 0.49 +0.7
575,174 + CCNA_00559 0.51 -1.2
575,174 + CCNA_00559 0.51 -2.1
575,174 + CCNA_00559 0.51 -2.7
575,174 + CCNA_00559 0.51 -2.2
575,174 + +1.7
575,174 + CCNA_00559 0.51 -0.4
575,174 + CCNA_00559 0.51 -1.5
575,174 + CCNA_00559 0.51 -2.7
575,182 - CCNA_00559 0.52 -3.1
575,182 - CCNA_00559 0.52 -0.0
575,182 - CCNA_00559 0.52 -3.0
575,182 - CCNA_00559 0.52 -1.8
575,182 - CCNA_00559 0.52 -2.2
575,182 - CCNA_00559 0.52 -3.7
575,182 - CCNA_00559 0.52 -4.4
575,182 - CCNA_00559 0.52 -3.1
575,196 + CCNA_00559 0.53 -1.1
575,217 - CCNA_00559 0.55 -3.3
575,222 - CCNA_00559 0.55 -2.4
575,222 - CCNA_00559 0.55 -0.0
575,222 - CCNA_00559 0.55 -3.5
575,235 - CCNA_00559 0.56 -3.1
575,240 - CCNA_00559 0.57 -3.4
575,244 + CCNA_00559 0.57 -0.7
575,245 - CCNA_00559 0.57 -1.6
575,249 + CCNA_00559 0.57 -0.7
575,250 + CCNA_00559 0.58 -1.4
575,265 - CCNA_00559 0.59 -3.2
575,305 - CCNA_00559 0.62 -2.4
575,313 + CCNA_00559 0.63 -2.9
575,328 + CCNA_00559 0.64 +0.3
575,336 - CCNA_00559 0.65 -3.7
575,354 + CCNA_00559 0.67 -0.9
575,354 + CCNA_00559 0.67 -1.1
575,362 - CCNA_00559 0.67 -1.1
575,374 + CCNA_00559 0.68 -1.4
575,382 - CCNA_00559 0.69 -3.6
575,382 - CCNA_00559 0.69 -2.9
575,384 - CCNA_00559 0.69 -4.1
575,389 - CCNA_00559 0.70 -2.8
575,410 - CCNA_00559 0.71 -1.7
575,410 - CCNA_00559 0.71 -1.3
575,410 - CCNA_00559 0.71 -1.8
575,451 - CCNA_00559 0.75 -2.7

Or see this region's nucleotide sequence