Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00288

Experiment: a-Cyclodextrin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00287 and CCNA_00288 are separated by 166 nucleotidesCCNA_00288 and CCNA_00289 are separated by 14 nucleotidesCCNA_00289 and CCNA_00290 are separated by 250 nucleotides CCNA_00287: CCNA_00287 - photosensory histidine protein kinase LovK, at 298,212 to 299,318 _00287 CCNA_00288: CCNA_00288 - ABC-type sulfate transport system, periplasmic component, at 299,485 to 300,534 _00288 CCNA_00289: CCNA_00289 - hypothetical protein, at 300,549 to 300,797 _00289 CCNA_00290: CCNA_00290 - autotransporter protein, at 301,048 to 304,305 _00290 Position (kb) 299 300 301Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 298.488 kb on + strand, within CCNA_00287at 298.488 kb on + strand, within CCNA_00287at 298.488 kb on + strand, within CCNA_00287at 298.488 kb on + strand, within CCNA_00287at 298.488 kb on + strand, within CCNA_00287at 298.488 kb on + strand, within CCNA_00287at 298.488 kb on + strand, within CCNA_00287at 298.495 kb on + strand, within CCNA_00287at 298.496 kb on - strand, within CCNA_00287at 298.496 kb on - strand, within CCNA_00287at 298.496 kb on - strand, within CCNA_00287at 298.538 kb on + strand, within CCNA_00287at 298.562 kb on + strand, within CCNA_00287at 298.585 kb on + strand, within CCNA_00287at 298.596 kb on + strand, within CCNA_00287at 298.620 kb on - strand, within CCNA_00287at 298.633 kb on + strand, within CCNA_00287at 298.674 kb on - strand, within CCNA_00287at 298.674 kb on - strand, within CCNA_00287at 298.677 kb on + strand, within CCNA_00287at 298.677 kb on + strand, within CCNA_00287at 298.690 kb on - strand, within CCNA_00287at 298.695 kb on - strand, within CCNA_00287at 298.720 kb on - strand, within CCNA_00287at 298.723 kb on + strand, within CCNA_00287at 298.723 kb on + strand, within CCNA_00287at 298.753 kb on - strand, within CCNA_00287at 298.755 kb on - strand, within CCNA_00287at 298.787 kb on - strand, within CCNA_00287at 298.787 kb on - strand, within CCNA_00287at 298.824 kb on + strand, within CCNA_00287at 298.827 kb on - strand, within CCNA_00287at 298.829 kb on + strand, within CCNA_00287at 298.832 kb on + strandat 298.832 kb on + strand, within CCNA_00287at 298.854 kb on + strand, within CCNA_00287at 298.856 kb on + strand, within CCNA_00287at 298.862 kb on - strand, within CCNA_00287at 298.870 kb on + strand, within CCNA_00287at 299.074 kb on + strand, within CCNA_00287at 299.074 kb on + strand, within CCNA_00287at 299.074 kb on + strand, within CCNA_00287at 299.074 kb on + strand, within CCNA_00287at 299.074 kb on + strand, within CCNA_00287at 299.074 kb on + strand, within CCNA_00287at 299.082 kb on - strand, within CCNA_00287at 299.082 kb on - strand, within CCNA_00287at 299.082 kb on - strand, within CCNA_00287at 299.128 kb on - strand, within CCNA_00287at 299.144 kb on - strand, within CCNA_00287at 299.150 kb on + strand, within CCNA_00287at 299.164 kb on - strand, within CCNA_00287at 299.211 kb on + strandat 299.211 kb on + strandat 299.220 kb on - strandat 299.240 kb on - strandat 299.263 kb on - strandat 299.267 kb on + strandat 299.321 kb on - strandat 299.325 kb on + strandat 299.327 kb on - strandat 299.356 kb on - strandat 299.421 kb on - strandat 299.478 kb on - strandat 299.479 kb on - strandat 299.506 kb on + strandat 299.522 kb on + strandat 299.536 kb on + strandat 299.539 kb on - strandat 299.556 kb on + strandat 299.556 kb on + strandat 299.556 kb on + strandat 299.564 kb on - strandat 299.580 kb on + strandat 299.591 kb on + strand, within CCNA_00288at 299.592 kb on + strand, within CCNA_00288at 299.599 kb on - strand, within CCNA_00288at 299.620 kb on + strand, within CCNA_00288at 299.627 kb on + strand, within CCNA_00288at 299.628 kb on - strand, within CCNA_00288at 299.647 kb on - strand, within CCNA_00288at 299.654 kb on + strand, within CCNA_00288at 299.654 kb on + strand, within CCNA_00288at 299.689 kb on + strand, within CCNA_00288at 299.693 kb on + strand, within CCNA_00288at 299.697 kb on - strand, within CCNA_00288at 299.698 kb on + strand, within CCNA_00288at 299.698 kb on + strand, within CCNA_00288at 299.706 kb on - strand, within CCNA_00288at 299.754 kb on - strand, within CCNA_00288at 299.783 kb on + strand, within CCNA_00288at 299.786 kb on - strand, within CCNA_00288at 299.792 kb on + strand, within CCNA_00288at 299.810 kb on - strand, within CCNA_00288at 299.848 kb on + strand, within CCNA_00288at 299.874 kb on + strand, within CCNA_00288at 299.882 kb on - strand, within CCNA_00288at 299.908 kb on + strand, within CCNA_00288at 299.908 kb on + strand, within CCNA_00288at 299.924 kb on + strand, within CCNA_00288at 299.924 kb on + strand, within CCNA_00288at 299.932 kb on - strand, within CCNA_00288at 299.948 kb on + strand, within CCNA_00288at 299.948 kb on + strand, within CCNA_00288at 299.955 kb on - strand, within CCNA_00288at 299.962 kb on - strand, within CCNA_00288at 299.987 kb on + strand, within CCNA_00288at 300.047 kb on - strand, within CCNA_00288at 300.080 kb on + strand, within CCNA_00288at 300.080 kb on + strand, within CCNA_00288at 300.125 kb on - strand, within CCNA_00288at 300.136 kb on + strand, within CCNA_00288at 300.152 kb on - strand, within CCNA_00288at 300.188 kb on + strand, within CCNA_00288at 300.243 kb on - strand, within CCNA_00288at 300.267 kb on - strand, within CCNA_00288at 300.267 kb on - strand, within CCNA_00288at 300.267 kb on - strand, within CCNA_00288at 300.267 kb on - strand, within CCNA_00288at 300.303 kb on + strand, within CCNA_00288at 300.321 kb on + strand, within CCNA_00288at 300.324 kb on - strand, within CCNA_00288at 300.329 kb on - strand, within CCNA_00288at 300.356 kb on + strand, within CCNA_00288at 300.364 kb on - strand, within CCNA_00288at 300.373 kb on - strand, within CCNA_00288at 300.373 kb on - strand, within CCNA_00288at 300.387 kb on + strand, within CCNA_00288at 300.387 kb on + strand, within CCNA_00288at 300.387 kb on + strand, within CCNA_00288at 300.395 kb on - strand, within CCNA_00288at 300.406 kb on - strand, within CCNA_00288at 300.416 kb on - strand, within CCNA_00288at 300.421 kb on + strand, within CCNA_00288at 300.422 kb on + strand, within CCNA_00288at 300.429 kb on - strand, within CCNA_00288at 300.429 kb on - strand, within CCNA_00288at 300.440 kb on - strandat 300.499 kb on + strandat 300.572 kb on + strandat 300.599 kb on - strand, within CCNA_00289at 300.599 kb on - strand, within CCNA_00289at 300.622 kb on + strand, within CCNA_00289at 300.660 kb on + strand, within CCNA_00289at 300.711 kb on + strand, within CCNA_00289at 300.712 kb on + strand, within CCNA_00289at 300.716 kb on + strand, within CCNA_00289at 300.720 kb on - strand, within CCNA_00289at 300.720 kb on - strand, within CCNA_00289at 300.735 kb on - strand, within CCNA_00289at 300.746 kb on + strand, within CCNA_00289at 300.754 kb on - strand, within CCNA_00289at 300.754 kb on - strand, within CCNA_00289at 300.754 kb on - strand, within CCNA_00289at 300.754 kb on - strand, within CCNA_00289at 300.754 kb on - strand, within CCNA_00289at 300.806 kb on - strandat 301.004 kb on + strandat 301.046 kb on + strandat 301.046 kb on + strandat 301.046 kb on + strandat 301.046 kb on + strandat 301.046 kb on + strandat 301.054 kb on - strandat 301.054 kb on - strandat 301.054 kb on - strandat 301.054 kb on - strandat 301.075 kb on - strandat 301.117 kb on + strandat 301.143 kb on + strandat 301.143 kb on + strandat 301.151 kb on - strandat 301.151 kb on - strandat 301.201 kb on - strandat 301.201 kb on - strandat 301.228 kb on - strandat 301.228 kb on - strandat 301.228 kb on - strandat 301.240 kb on + strandat 301.248 kb on - strandat 301.248 kb on - strandat 301.302 kb on - strandat 301.303 kb on - strandat 301.303 kb on - strandat 301.333 kb on + strandat 301.420 kb on - strand, within CCNA_00290at 301.434 kb on - strand, within CCNA_00290at 301.436 kb on - strand, within CCNA_00290at 301.499 kb on + strand, within CCNA_00290

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin (C)
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298,488 + CCNA_00287 0.25 -1.8
298,488 + CCNA_00287 0.25 +0.2
298,488 + CCNA_00287 0.25 -0.3
298,488 + CCNA_00287 0.25 -0.9
298,488 + CCNA_00287 0.25 -1.4
298,488 + CCNA_00287 0.25 -1.1
298,488 + CCNA_00287 0.25 -1.0
298,495 + CCNA_00287 0.26 -0.4
298,496 - CCNA_00287 0.26 +0.3
298,496 - CCNA_00287 0.26 -1.2
298,496 - CCNA_00287 0.26 -0.6
298,538 + CCNA_00287 0.29 -0.8
298,562 + CCNA_00287 0.32 -1.8
298,585 + CCNA_00287 0.34 -0.3
298,596 + CCNA_00287 0.35 -2.4
298,620 - CCNA_00287 0.37 +0.8
298,633 + CCNA_00287 0.38 -2.5
298,674 - CCNA_00287 0.42 +0.6
298,674 - CCNA_00287 0.42 -1.3
298,677 + CCNA_00287 0.42 -0.5
298,677 + CCNA_00287 0.42 -0.0
298,690 - CCNA_00287 0.43 -1.1
298,695 - CCNA_00287 0.44 +0.3
298,720 - CCNA_00287 0.46 -0.5
298,723 + CCNA_00287 0.46 +0.2
298,723 + CCNA_00287 0.46 +0.4
298,753 - CCNA_00287 0.49 -2.8
298,755 - CCNA_00287 0.49 -1.3
298,787 - CCNA_00287 0.52 +0.6
298,787 - CCNA_00287 0.52 -0.1
298,824 + CCNA_00287 0.55 -2.9
298,827 - CCNA_00287 0.56 +0.7
298,829 + CCNA_00287 0.56 -3.0
298,832 + +0.7
298,832 + CCNA_00287 0.56 -2.2
298,854 + CCNA_00287 0.58 -1.5
298,856 + CCNA_00287 0.58 -1.2
298,862 - CCNA_00287 0.59 -0.4
298,870 + CCNA_00287 0.59 -3.3
299,074 + CCNA_00287 0.78 -0.3
299,074 + CCNA_00287 0.78 -1.6
299,074 + CCNA_00287 0.78 -1.1
299,074 + CCNA_00287 0.78 -1.9
299,074 + CCNA_00287 0.78 -0.6
299,074 + CCNA_00287 0.78 -2.3
299,082 - CCNA_00287 0.79 -1.0
299,082 - CCNA_00287 0.79 -0.4
299,082 - CCNA_00287 0.79 -0.6
299,128 - CCNA_00287 0.83 -1.5
299,144 - CCNA_00287 0.84 -0.4
299,150 + CCNA_00287 0.85 -2.3
299,164 - CCNA_00287 0.86 +0.3
299,211 + -0.4
299,211 + +2.7
299,220 - -0.9
299,240 - -0.5
299,263 - -0.8
299,267 + -0.7
299,321 - -0.3
299,325 + -1.2
299,327 - +0.4
299,356 - -0.7
299,421 - +1.7
299,478 - -1.9
299,479 - -0.1
299,506 + -0.7
299,522 + -1.3
299,536 + -2.7
299,539 - -3.1
299,556 + -2.1
299,556 + -3.3
299,556 + -1.6
299,564 - -2.0
299,580 + +0.4
299,591 + CCNA_00288 0.10 -3.5
299,592 + CCNA_00288 0.10 -2.0
299,599 - CCNA_00288 0.11 -4.1
299,620 + CCNA_00288 0.13 -2.8
299,627 + CCNA_00288 0.14 -1.2
299,628 - CCNA_00288 0.14 -0.7
299,647 - CCNA_00288 0.15 -3.1
299,654 + CCNA_00288 0.16 -3.5
299,654 + CCNA_00288 0.16 -1.7
299,689 + CCNA_00288 0.19 -4.1
299,693 + CCNA_00288 0.20 -2.0
299,697 - CCNA_00288 0.20 -1.9
299,698 + CCNA_00288 0.20 -1.3
299,698 + CCNA_00288 0.20 -3.0
299,706 - CCNA_00288 0.21 -1.2
299,754 - CCNA_00288 0.26 -3.4
299,783 + CCNA_00288 0.28 -1.6
299,786 - CCNA_00288 0.29 -2.1
299,792 + CCNA_00288 0.29 -0.1
299,810 - CCNA_00288 0.31 -3.3
299,848 + CCNA_00288 0.35 -1.5
299,874 + CCNA_00288 0.37 -2.4
299,882 - CCNA_00288 0.38 -3.5
299,908 + CCNA_00288 0.40 -2.8
299,908 + CCNA_00288 0.40 -1.6
299,924 + CCNA_00288 0.42 -1.4
299,924 + CCNA_00288 0.42 +0.2
299,932 - CCNA_00288 0.43 -2.6
299,948 + CCNA_00288 0.44 -2.3
299,948 + CCNA_00288 0.44 +0.4
299,955 - CCNA_00288 0.45 -0.3
299,962 - CCNA_00288 0.45 -3.8
299,987 + CCNA_00288 0.48 -0.5
300,047 - CCNA_00288 0.54 -2.8
300,080 + CCNA_00288 0.57 -2.2
300,080 + CCNA_00288 0.57 -0.4
300,125 - CCNA_00288 0.61 -2.9
300,136 + CCNA_00288 0.62 -3.6
300,152 - CCNA_00288 0.64 -2.3
300,188 + CCNA_00288 0.67 -2.5
300,243 - CCNA_00288 0.72 -0.6
300,267 - CCNA_00288 0.74 -2.8
300,267 - CCNA_00288 0.74 -3.3
300,267 - CCNA_00288 0.74 -2.9
300,267 - CCNA_00288 0.74 -1.8
300,303 + CCNA_00288 0.78 +0.2
300,321 + CCNA_00288 0.80 -3.0
300,324 - CCNA_00288 0.80 -2.5
300,329 - CCNA_00288 0.80 +0.7
300,356 + CCNA_00288 0.83 -2.5
300,364 - CCNA_00288 0.84 -3.4
300,373 - CCNA_00288 0.85 -2.7
300,373 - CCNA_00288 0.85 -2.9
300,387 + CCNA_00288 0.86 -2.8
300,387 + CCNA_00288 0.86 -0.4
300,387 + CCNA_00288 0.86 -2.3
300,395 - CCNA_00288 0.87 -2.6
300,406 - CCNA_00288 0.88 -5.6
300,416 - CCNA_00288 0.89 -2.3
300,421 + CCNA_00288 0.89 -2.8
300,422 + CCNA_00288 0.89 +0.7
300,429 - CCNA_00288 0.90 -3.4
300,429 - CCNA_00288 0.90 -1.2
300,440 - -2.7
300,499 + -2.4
300,572 + -0.4
300,599 - CCNA_00289 0.20 +0.7
300,599 - CCNA_00289 0.20 +1.5
300,622 + CCNA_00289 0.29 +1.4
300,660 + CCNA_00289 0.45 -2.0
300,711 + CCNA_00289 0.65 -3.0
300,712 + CCNA_00289 0.65 +0.2
300,716 + CCNA_00289 0.67 +0.7
300,720 - CCNA_00289 0.69 -0.7
300,720 - CCNA_00289 0.69 +0.6
300,735 - CCNA_00289 0.75 +0.7
300,746 + CCNA_00289 0.79 -0.3
300,754 - CCNA_00289 0.82 +0.5
300,754 - CCNA_00289 0.82 -0.2
300,754 - CCNA_00289 0.82 -0.7
300,754 - CCNA_00289 0.82 -2.2
300,754 - CCNA_00289 0.82 -1.4
300,806 - +0.1
301,004 + -2.3
301,046 + -2.0
301,046 + +0.4
301,046 + -1.8
301,046 + -1.7
301,046 + -0.7
301,054 - +2.4
301,054 - +2.6
301,054 - +2.9
301,054 - +2.5
301,075 - +2.1
301,117 + -2.5
301,143 + -2.2
301,143 + -0.1
301,151 - -0.6
301,151 - -2.2
301,201 - -1.1
301,201 - -1.1
301,228 - -1.8
301,228 - -0.5
301,228 - -2.3
301,240 + -2.5
301,248 - -0.8
301,248 - -0.8
301,302 - -0.8
301,303 - -2.2
301,303 - -1.3
301,333 + -2.3
301,420 - CCNA_00290 0.11 -1.8
301,434 - CCNA_00290 0.12 -1.1
301,436 - CCNA_00290 0.12 -1.9
301,499 + CCNA_00290 0.14 -1.7

Or see this region's nucleotide sequence