Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00196

Experiment: a-Cyclodextrin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00194 and CCNA_00195 are separated by 141 nucleotidesCCNA_00195 and CCNA_00196 overlap by 4 nucleotidesCCNA_00196 and CCNA_00197 are separated by 589 nucleotidesCCNA_00197 and CCNA_00198 overlap by 4 nucleotides CCNA_00194: CCNA_00194 - Antibiotic biosynthesis monooxygenase family protein, at 208,043 to 208,345 _00194 CCNA_00195: CCNA_00195 - 3-isopropylmalate dehydratase small subunit, at 208,487 to 209,095 _00195 CCNA_00196: CCNA_00196 - 3-isopropylmalate dehydratase large subunit, at 209,092 to 210,531 _00196 CCNA_00197: CCNA_00197 - LSU ribosomal protein L19P, at 211,121 to 211,522 _00197 CCNA_00198: CCNA_00198 - tRNA (guanine-N1) -methyltransferase, at 211,519 to 212,256 _00198 Position (kb) 209 210 211Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 208.227 kb on + strand, within CCNA_00194at 208.227 kb on + strand, within CCNA_00194at 208.234 kb on - strand, within CCNA_00194at 208.241 kb on + strand, within CCNA_00194at 208.260 kb on + strand, within CCNA_00194at 208.260 kb on + strand, within CCNA_00194at 208.260 kb on + strand, within CCNA_00194at 208.260 kb on + strand, within CCNA_00194at 208.260 kb on + strand, within CCNA_00194at 208.268 kb on - strand, within CCNA_00194at 208.268 kb on - strand, within CCNA_00194at 208.268 kb on - strand, within CCNA_00194at 208.268 kb on - strand, within CCNA_00194at 208.316 kb on - strandat 208.319 kb on + strandat 208.342 kb on - strandat 208.347 kb on - strandat 208.348 kb on - strandat 208.442 kb on + strandat 208.482 kb on - strandat 208.482 kb on - strandat 208.497 kb on + strandat 208.500 kb on - strandat 208.505 kb on - strandat 208.507 kb on + strandat 208.524 kb on + strandat 208.573 kb on + strand, within CCNA_00195at 208.645 kb on + strand, within CCNA_00195at 208.692 kb on + strand, within CCNA_00195at 208.712 kb on - strand, within CCNA_00195at 208.712 kb on - strand, within CCNA_00195at 208.722 kb on - strand, within CCNA_00195at 208.723 kb on + strand, within CCNA_00195at 208.731 kb on - strand, within CCNA_00195at 208.736 kb on - strand, within CCNA_00195at 208.748 kb on - strand, within CCNA_00195at 208.896 kb on + strand, within CCNA_00195at 208.898 kb on + strand, within CCNA_00195at 208.898 kb on + strand, within CCNA_00195at 208.898 kb on + strand, within CCNA_00195at 208.898 kb on + strand, within CCNA_00195at 208.898 kb on + strand, within CCNA_00195at 208.898 kb on + strand, within CCNA_00195at 208.906 kb on - strand, within CCNA_00195at 208.906 kb on - strand, within CCNA_00195at 208.908 kb on + strand, within CCNA_00195at 208.916 kb on - strand, within CCNA_00195at 208.916 kb on - strand, within CCNA_00195at 208.916 kb on - strand, within CCNA_00195at 208.931 kb on + strand, within CCNA_00195at 208.939 kb on - strand, within CCNA_00195at 208.970 kb on - strand, within CCNA_00195at 208.970 kb on - strand, within CCNA_00195at 208.987 kb on - strand, within CCNA_00195at 208.996 kb on + strand, within CCNA_00195at 209.001 kb on + strand, within CCNA_00195at 209.001 kb on + strand, within CCNA_00195at 209.001 kb on + strand, within CCNA_00195at 209.009 kb on - strand, within CCNA_00195at 209.009 kb on - strand, within CCNA_00195at 209.009 kb on - strand, within CCNA_00195at 209.012 kb on - strand, within CCNA_00195at 209.012 kb on - strand, within CCNA_00195at 209.012 kb on - strand, within CCNA_00195at 209.014 kb on + strand, within CCNA_00195at 209.019 kb on + strand, within CCNA_00195at 209.019 kb on + strand, within CCNA_00195at 209.022 kb on - strand, within CCNA_00195at 209.032 kb on - strand, within CCNA_00195at 209.042 kb on - strandat 209.081 kb on + strandat 209.082 kb on + strandat 209.095 kb on - strandat 209.181 kb on - strandat 209.229 kb on - strandat 209.231 kb on - strandat 209.250 kb on + strand, within CCNA_00196at 209.252 kb on - strand, within CCNA_00196at 209.326 kb on - strand, within CCNA_00196at 209.326 kb on - strand, within CCNA_00196at 209.332 kb on + strand, within CCNA_00196at 209.340 kb on - strand, within CCNA_00196at 209.346 kb on - strand, within CCNA_00196at 209.367 kb on + strand, within CCNA_00196at 209.375 kb on - strand, within CCNA_00196at 209.384 kb on + strand, within CCNA_00196at 209.390 kb on + strand, within CCNA_00196at 209.390 kb on + strand, within CCNA_00196at 209.390 kb on + strand, within CCNA_00196at 209.392 kb on - strand, within CCNA_00196at 209.392 kb on - strand, within CCNA_00196at 209.392 kb on - strand, within CCNA_00196at 209.392 kb on - strand, within CCNA_00196at 209.398 kb on - strand, within CCNA_00196at 209.398 kb on - strand, within CCNA_00196at 209.398 kb on - strand, within CCNA_00196at 209.398 kb on - strand, within CCNA_00196at 209.398 kb on - strand, within CCNA_00196at 209.398 kb on - strand, within CCNA_00196at 209.398 kb on - strand, within CCNA_00196at 209.398 kb on - strand, within CCNA_00196at 209.405 kb on + strand, within CCNA_00196at 209.419 kb on + strand, within CCNA_00196at 209.456 kb on + strand, within CCNA_00196at 209.466 kb on - strand, within CCNA_00196at 209.544 kb on - strand, within CCNA_00196at 209.550 kb on + strand, within CCNA_00196at 209.586 kb on - strand, within CCNA_00196at 209.621 kb on - strand, within CCNA_00196at 209.657 kb on - strand, within CCNA_00196at 209.673 kb on + strand, within CCNA_00196at 209.673 kb on + strand, within CCNA_00196at 209.709 kb on - strand, within CCNA_00196at 209.709 kb on - strand, within CCNA_00196at 209.709 kb on - strand, within CCNA_00196at 209.733 kb on - strand, within CCNA_00196at 209.751 kb on - strand, within CCNA_00196at 209.755 kb on + strand, within CCNA_00196at 209.755 kb on + strand, within CCNA_00196at 209.763 kb on - strand, within CCNA_00196at 209.763 kb on - strand, within CCNA_00196at 209.763 kb on - strand, within CCNA_00196at 209.763 kb on - strand, within CCNA_00196at 209.763 kb on - strand, within CCNA_00196at 209.778 kb on - strand, within CCNA_00196at 209.793 kb on + strand, within CCNA_00196at 209.793 kb on + strand, within CCNA_00196at 209.793 kb on + strand, within CCNA_00196at 209.808 kb on - strand, within CCNA_00196at 209.868 kb on + strand, within CCNA_00196at 209.868 kb on + strand, within CCNA_00196at 209.882 kb on + strand, within CCNA_00196at 209.890 kb on - strand, within CCNA_00196at 209.891 kb on - strand, within CCNA_00196at 209.917 kb on + strand, within CCNA_00196at 209.945 kb on - strand, within CCNA_00196at 209.972 kb on - strand, within CCNA_00196at 209.978 kb on - strand, within CCNA_00196at 210.019 kb on + strand, within CCNA_00196at 210.029 kb on + strand, within CCNA_00196at 210.031 kb on - strand, within CCNA_00196at 210.051 kb on + strand, within CCNA_00196at 210.051 kb on + strand, within CCNA_00196at 210.052 kb on + strand, within CCNA_00196at 210.059 kb on - strand, within CCNA_00196at 210.059 kb on - strand, within CCNA_00196at 210.059 kb on - strand, within CCNA_00196at 210.059 kb on - strand, within CCNA_00196at 210.059 kb on - strand, within CCNA_00196at 210.059 kb on - strand, within CCNA_00196at 210.062 kb on + strand, within CCNA_00196at 210.069 kb on - strand, within CCNA_00196at 210.070 kb on - strand, within CCNA_00196at 210.070 kb on - strand, within CCNA_00196at 210.070 kb on - strand, within CCNA_00196at 210.085 kb on - strand, within CCNA_00196at 210.100 kb on + strand, within CCNA_00196at 210.129 kb on + strand, within CCNA_00196at 210.148 kb on + strand, within CCNA_00196at 210.154 kb on + strand, within CCNA_00196at 210.162 kb on - strand, within CCNA_00196at 210.162 kb on - strand, within CCNA_00196at 210.162 kb on - strand, within CCNA_00196at 210.175 kb on + strand, within CCNA_00196at 210.178 kb on - strand, within CCNA_00196at 210.180 kb on + strand, within CCNA_00196at 210.180 kb on + strand, within CCNA_00196at 210.183 kb on - strand, within CCNA_00196at 210.188 kb on - strand, within CCNA_00196at 210.188 kb on - strand, within CCNA_00196at 210.188 kb on - strand, within CCNA_00196at 210.188 kb on - strand, within CCNA_00196at 210.199 kb on + strand, within CCNA_00196at 210.292 kb on + strand, within CCNA_00196at 210.320 kb on + strand, within CCNA_00196at 210.322 kb on - strand, within CCNA_00196at 210.333 kb on - strand, within CCNA_00196at 210.337 kb on + strand, within CCNA_00196at 210.354 kb on + strand, within CCNA_00196at 210.354 kb on + strand, within CCNA_00196at 210.356 kb on + strand, within CCNA_00196at 210.366 kb on + strand, within CCNA_00196at 210.368 kb on - strand, within CCNA_00196at 210.369 kb on - strand, within CCNA_00196at 210.374 kb on - strand, within CCNA_00196at 210.387 kb on + strand, within CCNA_00196at 210.389 kb on - strandat 210.402 kb on + strandat 210.402 kb on + strandat 210.402 kb on + strandat 210.407 kb on + strandat 210.410 kb on - strandat 210.410 kb on - strandat 210.412 kb on + strandat 210.412 kb on + strandat 210.414 kb on + strandat 210.417 kb on + strandat 210.420 kb on - strandat 210.420 kb on - strandat 210.420 kb on - strandat 210.420 kb on - strandat 210.421 kb on - strandat 210.452 kb on + strandat 210.505 kb on - strandat 210.657 kb on - strandat 210.665 kb on + strandat 210.703 kb on - strandat 210.703 kb on - strandat 210.703 kb on - strandat 210.759 kb on + strandat 210.838 kb on + strandat 210.849 kb on + strandat 210.849 kb on + strandat 210.867 kb on - strandat 210.902 kb on + strandat 210.903 kb on - strandat 210.912 kb on + strandat 210.912 kb on + strandat 210.991 kb on - strandat 211.031 kb on + strandat 211.034 kb on - strandat 211.118 kb on + strandat 211.119 kb on - strandat 211.120 kb on - strandat 211.120 kb on - strandat 211.145 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin (C)
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208,227 + CCNA_00194 0.61 -0.5
208,227 + CCNA_00194 0.61 -0.4
208,234 - CCNA_00194 0.63 -0.6
208,241 + CCNA_00194 0.65 -0.7
208,260 + CCNA_00194 0.72 -0.0
208,260 + CCNA_00194 0.72 -2.3
208,260 + CCNA_00194 0.72 +0.1
208,260 + CCNA_00194 0.72 -1.9
208,260 + CCNA_00194 0.72 -1.8
208,268 - CCNA_00194 0.74 +0.6
208,268 - CCNA_00194 0.74 -2.3
208,268 - CCNA_00194 0.74 +0.5
208,268 - CCNA_00194 0.74 +1.3
208,316 - -0.9
208,319 + -0.3
208,342 - +0.7
208,347 - +0.6
208,348 - +0.4
208,442 + +0.4
208,482 - +1.5
208,482 - +1.0
208,497 + -1.7
208,500 - +1.7
208,505 - +1.6
208,507 + -3.3
208,524 + -0.9
208,573 + CCNA_00195 0.14 -2.4
208,645 + CCNA_00195 0.26 -1.5
208,692 + CCNA_00195 0.34 -2.7
208,712 - CCNA_00195 0.37 -1.6
208,712 - CCNA_00195 0.37 -2.0
208,722 - CCNA_00195 0.39 -2.9
208,723 + CCNA_00195 0.39 -1.0
208,731 - CCNA_00195 0.40 -4.2
208,736 - CCNA_00195 0.41 -2.7
208,748 - CCNA_00195 0.43 -5.5
208,896 + CCNA_00195 0.67 -4.0
208,898 + CCNA_00195 0.67 -2.3
208,898 + CCNA_00195 0.67 -1.3
208,898 + CCNA_00195 0.67 -3.9
208,898 + CCNA_00195 0.67 -1.1
208,898 + CCNA_00195 0.67 -2.0
208,898 + CCNA_00195 0.67 -1.0
208,906 - CCNA_00195 0.69 -2.3
208,906 - CCNA_00195 0.69 -3.0
208,908 + CCNA_00195 0.69 -5.0
208,916 - CCNA_00195 0.70 -4.2
208,916 - CCNA_00195 0.70 -2.2
208,916 - CCNA_00195 0.70 -1.4
208,931 + CCNA_00195 0.73 -2.5
208,939 - CCNA_00195 0.74 -3.8
208,970 - CCNA_00195 0.79 -0.0
208,970 - CCNA_00195 0.79 -1.0
208,987 - CCNA_00195 0.82 -3.2
208,996 + CCNA_00195 0.84 -1.9
209,001 + CCNA_00195 0.84 -0.8
209,001 + CCNA_00195 0.84 -2.5
209,001 + CCNA_00195 0.84 -3.2
209,009 - CCNA_00195 0.86 -4.3
209,009 - CCNA_00195 0.86 -2.0
209,009 - CCNA_00195 0.86 -4.6
209,012 - CCNA_00195 0.86 -3.2
209,012 - CCNA_00195 0.86 -1.2
209,012 - CCNA_00195 0.86 -1.8
209,014 + CCNA_00195 0.87 -1.5
209,019 + CCNA_00195 0.87 -4.2
209,019 + CCNA_00195 0.87 -4.0
209,022 - CCNA_00195 0.88 -3.7
209,032 - CCNA_00195 0.89 -1.9
209,042 - -3.9
209,081 + -2.3
209,082 + -1.9
209,095 - -1.4
209,181 - -2.5
209,229 - -2.1
209,231 - -1.1
209,250 + CCNA_00196 0.11 -2.2
209,252 - CCNA_00196 0.11 -1.6
209,326 - CCNA_00196 0.16 -3.0
209,326 - CCNA_00196 0.16 -1.4
209,332 + CCNA_00196 0.17 -3.6
209,340 - CCNA_00196 0.17 -0.8
209,346 - CCNA_00196 0.18 -2.1
209,367 + CCNA_00196 0.19 -4.5
209,375 - CCNA_00196 0.20 -3.1
209,384 + CCNA_00196 0.20 -1.2
209,390 + CCNA_00196 0.21 -1.7
209,390 + CCNA_00196 0.21 -3.1
209,390 + CCNA_00196 0.21 -0.0
209,392 - CCNA_00196 0.21 -1.8
209,392 - CCNA_00196 0.21 +0.8
209,392 - CCNA_00196 0.21 -1.8
209,392 - CCNA_00196 0.21 -0.2
209,398 - CCNA_00196 0.21 -2.1
209,398 - CCNA_00196 0.21 -2.1
209,398 - CCNA_00196 0.21 -0.2
209,398 - CCNA_00196 0.21 -3.1
209,398 - CCNA_00196 0.21 -1.1
209,398 - CCNA_00196 0.21 -1.4
209,398 - CCNA_00196 0.21 -3.4
209,398 - CCNA_00196 0.21 -2.6
209,405 + CCNA_00196 0.22 +0.8
209,419 + CCNA_00196 0.23 -0.9
209,456 + CCNA_00196 0.25 -3.4
209,466 - CCNA_00196 0.26 -2.2
209,544 - CCNA_00196 0.31 -1.1
209,550 + CCNA_00196 0.32 -0.6
209,586 - CCNA_00196 0.34 -1.7
209,621 - CCNA_00196 0.37 -1.2
209,657 - CCNA_00196 0.39 -3.6
209,673 + CCNA_00196 0.40 -0.4
209,673 + CCNA_00196 0.40 -1.5
209,709 - CCNA_00196 0.43 -1.9
209,709 - CCNA_00196 0.43 -1.6
209,709 - CCNA_00196 0.43 -2.8
209,733 - CCNA_00196 0.45 -2.8
209,751 - CCNA_00196 0.46 -2.8
209,755 + CCNA_00196 0.46 -1.8
209,755 + CCNA_00196 0.46 -2.7
209,763 - CCNA_00196 0.47 -3.7
209,763 - CCNA_00196 0.47 -2.2
209,763 - CCNA_00196 0.47 -1.4
209,763 - CCNA_00196 0.47 -2.5
209,763 - CCNA_00196 0.47 -0.6
209,778 - CCNA_00196 0.48 -2.5
209,793 + CCNA_00196 0.49 -3.7
209,793 + CCNA_00196 0.49 -3.9
209,793 + CCNA_00196 0.49 -2.4
209,808 - CCNA_00196 0.50 -2.4
209,868 + CCNA_00196 0.54 -0.7
209,868 + CCNA_00196 0.54 -3.8
209,882 + CCNA_00196 0.55 -2.8
209,890 - CCNA_00196 0.55 -2.5
209,891 - CCNA_00196 0.55 -0.7
209,917 + CCNA_00196 0.57 -4.0
209,945 - CCNA_00196 0.59 -2.2
209,972 - CCNA_00196 0.61 -1.1
209,978 - CCNA_00196 0.62 -1.6
210,019 + CCNA_00196 0.64 -3.1
210,029 + CCNA_00196 0.65 -2.2
210,031 - CCNA_00196 0.65 -3.9
210,051 + CCNA_00196 0.67 -1.3
210,051 + CCNA_00196 0.67 -1.4
210,052 + CCNA_00196 0.67 -2.4
210,059 - CCNA_00196 0.67 -5.5
210,059 - CCNA_00196 0.67 -0.9
210,059 - CCNA_00196 0.67 -1.2
210,059 - CCNA_00196 0.67 -4.2
210,059 - CCNA_00196 0.67 -3.6
210,059 - CCNA_00196 0.67 -2.3
210,062 + CCNA_00196 0.67 -2.9
210,069 - CCNA_00196 0.68 -3.7
210,070 - CCNA_00196 0.68 -1.2
210,070 - CCNA_00196 0.68 -1.4
210,070 - CCNA_00196 0.68 -2.6
210,085 - CCNA_00196 0.69 -4.8
210,100 + CCNA_00196 0.70 -1.1
210,129 + CCNA_00196 0.72 -1.8
210,148 + CCNA_00196 0.73 -3.5
210,154 + CCNA_00196 0.74 -4.6
210,162 - CCNA_00196 0.74 -2.4
210,162 - CCNA_00196 0.74 +0.4
210,162 - CCNA_00196 0.74 -3.5
210,175 + CCNA_00196 0.75 -4.2
210,178 - CCNA_00196 0.75 -2.9
210,180 + CCNA_00196 0.76 -1.9
210,180 + CCNA_00196 0.76 -3.6
210,183 - CCNA_00196 0.76 -3.0
210,188 - CCNA_00196 0.76 -2.0
210,188 - CCNA_00196 0.76 -3.9
210,188 - CCNA_00196 0.76 -3.3
210,188 - CCNA_00196 0.76 -1.1
210,199 + CCNA_00196 0.77 -3.1
210,292 + CCNA_00196 0.83 -0.8
210,320 + CCNA_00196 0.85 -2.6
210,322 - CCNA_00196 0.85 -2.7
210,333 - CCNA_00196 0.86 -3.7
210,337 + CCNA_00196 0.86 -3.6
210,354 + CCNA_00196 0.88 -4.1
210,354 + CCNA_00196 0.88 -0.2
210,356 + CCNA_00196 0.88 -3.9
210,366 + CCNA_00196 0.88 -4.3
210,368 - CCNA_00196 0.89 -2.7
210,369 - CCNA_00196 0.89 -2.3
210,374 - CCNA_00196 0.89 -4.4
210,387 + CCNA_00196 0.90 -2.4
210,389 - -0.8
210,402 + -3.1
210,402 + -3.4
210,402 + -0.4
210,407 + -0.9
210,410 - -2.4
210,410 - -0.9
210,412 + -1.9
210,412 + -2.9
210,414 + -0.8
210,417 + -0.7
210,420 - -2.8
210,420 - -2.8
210,420 - -0.0
210,420 - -4.0
210,421 - -1.6
210,452 + -1.5
210,505 - -3.0
210,657 - +0.4
210,665 + -0.3
210,703 - +2.5
210,703 - +1.7
210,703 - +1.6
210,759 + -0.8
210,838 + +0.7
210,849 + +0.1
210,849 + +0.9
210,867 - +1.7
210,902 + +1.3
210,903 - +0.0
210,912 + +0.9
210,912 + +0.1
210,991 - -0.1
211,031 + -1.6
211,034 - +1.2
211,118 + -0.2
211,119 - +2.7
211,120 - +2.7
211,120 - +3.3
211,145 - +2.1

Or see this region's nucleotide sequence