Experiment: a-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00145 and CCNA_00146 are separated by 24 nucleotides CCNA_00146 and CCNA_00147 are separated by 167 nucleotides CCNA_00147 and CCNA_00148 are separated by 75 nucleotides CCNA_00148 and CCNA_00149 are separated by 16 nucleotides CCNA_00149 and CCNA_00150 overlap by 4 nucleotides
CCNA_00145: CCNA_00145 - xanthosine triphosphate pyrophosphatase, at 156,966 to 157,568
_00145
CCNA_00146: CCNA_00146 - glutathione S-transferase, at 157,593 to 158,186
_00146
CCNA_00147: CCNA_00147 - hypothetical protein, at 158,354 to 158,470
_00147
CCNA_00148: CCNA_00148 - hypothetical protein, at 158,546 to 159,079
_00148
CCNA_00149: CCNA_00149 - Cro/CI-family transcriptional regulator, at 159,096 to 159,323
_00149
CCNA_00150: CCNA_00150 - PDZ domain family protein, at 159,320 to 160,297
_00150
Position (kb) 158
159 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 157.364 kb on + strand, within CCNA_00145 at 157.364 kb on + strand, within CCNA_00145 at 157.373 kb on + strand, within CCNA_00145 at 157.374 kb on - strand, within CCNA_00145 at 157.381 kb on - strand, within CCNA_00145 at 157.381 kb on - strand, within CCNA_00145 at 157.381 kb on - strand, within CCNA_00145 at 157.390 kb on + strand, within CCNA_00145 at 157.390 kb on + strand, within CCNA_00145 at 157.398 kb on - strand, within CCNA_00145 at 157.398 kb on - strand, within CCNA_00145 at 157.398 kb on - strand, within CCNA_00145 at 157.398 kb on - strand, within CCNA_00145 at 157.398 kb on - strand, within CCNA_00145 at 157.398 kb on - strand, within CCNA_00145 at 157.434 kb on - strand, within CCNA_00145 at 157.445 kb on + strand, within CCNA_00145 at 157.500 kb on + strand, within CCNA_00145 at 157.516 kb on + strand at 157.517 kb on + strand at 157.538 kb on + strand at 157.550 kb on + strand at 157.550 kb on + strand at 157.681 kb on - strand, within CCNA_00146 at 157.695 kb on - strand, within CCNA_00146 at 157.705 kb on - strand, within CCNA_00146 at 157.741 kb on - strand, within CCNA_00146 at 157.748 kb on - strand, within CCNA_00146 at 157.773 kb on + strand, within CCNA_00146 at 157.773 kb on + strand, within CCNA_00146 at 157.773 kb on + strand, within CCNA_00146 at 157.775 kb on + strand, within CCNA_00146 at 157.781 kb on - strand, within CCNA_00146 at 157.814 kb on + strand, within CCNA_00146 at 157.814 kb on + strand, within CCNA_00146 at 157.860 kb on + strand, within CCNA_00146 at 157.868 kb on - strand, within CCNA_00146 at 157.868 kb on - strand, within CCNA_00146 at 157.868 kb on - strand, within CCNA_00146 at 157.868 kb on - strand, within CCNA_00146 at 157.868 kb on - strand, within CCNA_00146 at 157.887 kb on + strand, within CCNA_00146 at 157.902 kb on + strand, within CCNA_00146 at 157.948 kb on + strand, within CCNA_00146 at 157.948 kb on + strand, within CCNA_00146 at 157.948 kb on + strand, within CCNA_00146 at 157.956 kb on - strand, within CCNA_00146 at 157.956 kb on - strand, within CCNA_00146 at 157.965 kb on + strand, within CCNA_00146 at 157.978 kb on - strand, within CCNA_00146 at 158.016 kb on - strand, within CCNA_00146 at 158.071 kb on + strand, within CCNA_00146 at 158.079 kb on - strand, within CCNA_00146 at 158.124 kb on + strand, within CCNA_00146 at 158.128 kb on + strand at 158.139 kb on + strand at 158.147 kb on - strand at 158.149 kb on - strand at 158.172 kb on - strand at 158.174 kb on + strand at 158.181 kb on + strand at 158.181 kb on + strand at 158.189 kb on - strand at 158.194 kb on - strand at 158.291 kb on + strand at 158.294 kb on - strand at 158.299 kb on - strand at 158.299 kb on - strand at 158.309 kb on - strand at 158.334 kb on + strand at 158.366 kb on + strand, within CCNA_00147 at 158.434 kb on + strand, within CCNA_00147 at 158.463 kb on + strand at 158.463 kb on + strand at 158.464 kb on - strand at 158.465 kb on + strand at 158.465 kb on + strand at 158.465 kb on + strand at 158.465 kb on + strand at 158.471 kb on - strand at 158.471 kb on - strand at 158.492 kb on - strand at 158.492 kb on - strand at 158.517 kb on + strand at 158.532 kb on + strand at 158.553 kb on + strand at 158.553 kb on + strand at 158.553 kb on + strand at 158.602 kb on + strand, within CCNA_00148 at 158.620 kb on - strand, within CCNA_00148 at 158.652 kb on - strand, within CCNA_00148 at 158.668 kb on - strand, within CCNA_00148 at 158.670 kb on + strand, within CCNA_00148 at 158.670 kb on - strand, within CCNA_00148 at 158.673 kb on - strand, within CCNA_00148 at 158.707 kb on + strand, within CCNA_00148 at 158.738 kb on + strand, within CCNA_00148 at 158.764 kb on + strand, within CCNA_00148 at 158.772 kb on - strand, within CCNA_00148 at 158.774 kb on + strand, within CCNA_00148 at 158.813 kb on + strand, within CCNA_00148 at 158.819 kb on + strand, within CCNA_00148 at 158.889 kb on - strand, within CCNA_00148 at 158.901 kb on + strand, within CCNA_00148 at 158.956 kb on + strand, within CCNA_00148 at 158.957 kb on + strand, within CCNA_00148 at 158.964 kb on - strand, within CCNA_00148 at 158.982 kb on - strand, within CCNA_00148 at 159.076 kb on - strand at 159.078 kb on + strand at 159.078 kb on + strand at 159.111 kb on + strand at 159.119 kb on - strand, within CCNA_00149 at 159.124 kb on + strand, within CCNA_00149 at 159.132 kb on - strand, within CCNA_00149 at 159.166 kb on - strand, within CCNA_00149 at 159.188 kb on + strand, within CCNA_00149 at 159.196 kb on - strand, within CCNA_00149 at 159.203 kb on - strand, within CCNA_00149 at 159.227 kb on + strand, within CCNA_00149 at 159.227 kb on + strand, within CCNA_00149 at 159.227 kb on + strand, within CCNA_00149 at 159.230 kb on - strand, within CCNA_00149 at 159.266 kb on - strand, within CCNA_00149 at 159.279 kb on + strand, within CCNA_00149 at 159.345 kb on + strand at 159.346 kb on + strand at 159.346 kb on + strand at 159.354 kb on - strand at 159.354 kb on - strand at 159.370 kb on + strand at 159.391 kb on - strand at 159.402 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin (C) remove 157,364 + CCNA_00145 0.66 -1.3 157,364 + CCNA_00145 0.66 -0.6 157,373 + CCNA_00145 0.67 -2.9 157,374 - CCNA_00145 0.68 -0.7 157,381 - CCNA_00145 0.69 +0.9 157,381 - CCNA_00145 0.69 +1.2 157,381 - CCNA_00145 0.69 +0.0 157,390 + CCNA_00145 0.70 -1.9 157,390 + CCNA_00145 0.70 -0.6 157,398 - CCNA_00145 0.72 -0.7 157,398 - CCNA_00145 0.72 -0.4 157,398 - CCNA_00145 0.72 -1.7 157,398 - CCNA_00145 0.72 -0.8 157,398 - CCNA_00145 0.72 +2.9 157,398 - CCNA_00145 0.72 +0.1 157,434 - CCNA_00145 0.78 +0.4 157,445 + CCNA_00145 0.79 -1.1 157,500 + CCNA_00145 0.89 -1.4 157,516 + +2.3 157,517 + +3.2 157,538 + -2.6 157,550 + +0.0 157,550 + +0.4 157,681 - CCNA_00146 0.15 +0.4 157,695 - CCNA_00146 0.17 -0.6 157,705 - CCNA_00146 0.19 +1.5 157,741 - CCNA_00146 0.25 -1.7 157,748 - CCNA_00146 0.26 -2.8 157,773 + CCNA_00146 0.30 -2.0 157,773 + CCNA_00146 0.30 +0.9 157,773 + CCNA_00146 0.30 +0.3 157,775 + CCNA_00146 0.31 -0.5 157,781 - CCNA_00146 0.32 -1.0 157,814 + CCNA_00146 0.37 -0.3 157,814 + CCNA_00146 0.37 +0.5 157,860 + CCNA_00146 0.45 -0.5 157,868 - CCNA_00146 0.46 -1.9 157,868 - CCNA_00146 0.46 -0.7 157,868 - CCNA_00146 0.46 +1.8 157,868 - CCNA_00146 0.46 +0.5 157,868 - CCNA_00146 0.46 -0.6 157,887 + CCNA_00146 0.49 +1.1 157,902 + CCNA_00146 0.52 -0.4 157,948 + CCNA_00146 0.60 +1.4 157,948 + CCNA_00146 0.60 +1.4 157,948 + CCNA_00146 0.60 +0.9 157,956 - CCNA_00146 0.61 -1.6 157,956 - CCNA_00146 0.61 -0.2 157,965 + CCNA_00146 0.63 +1.6 157,978 - CCNA_00146 0.65 -0.2 158,016 - CCNA_00146 0.71 +0.1 158,071 + CCNA_00146 0.80 +1.8 158,079 - CCNA_00146 0.82 -0.7 158,124 + CCNA_00146 0.89 +1.0 158,128 + -0.9 158,139 + -1.1 158,147 - -0.8 158,149 - -0.2 158,172 - -1.4 158,174 + +0.4 158,181 + +0.8 158,181 + +1.0 158,189 - -0.0 158,194 - +2.8 158,291 + +3.2 158,294 - +2.0 158,299 - -0.9 158,299 - -0.0 158,309 - -1.1 158,334 + +2.0 158,366 + CCNA_00147 0.10 +2.0 158,434 + CCNA_00147 0.68 +1.8 158,463 + +2.1 158,463 + +2.3 158,464 - -0.9 158,465 + +1.9 158,465 + +1.9 158,465 + +1.4 158,465 + +2.0 158,471 - -0.3 158,471 - -1.4 158,492 - -2.3 158,492 - -0.0 158,517 + +2.0 158,532 + +1.9 158,553 + +1.4 158,553 + +1.6 158,553 + +1.3 158,602 + CCNA_00148 0.10 +0.6 158,620 - CCNA_00148 0.14 -1.3 158,652 - CCNA_00148 0.20 -1.3 158,668 - CCNA_00148 0.23 -0.9 158,670 + CCNA_00148 0.23 +2.5 158,670 - CCNA_00148 0.23 +0.9 158,673 - CCNA_00148 0.24 -1.4 158,707 + CCNA_00148 0.30 +0.8 158,738 + CCNA_00148 0.36 +1.7 158,764 + CCNA_00148 0.41 +1.4 158,772 - CCNA_00148 0.42 -1.0 158,774 + CCNA_00148 0.43 +1.3 158,813 + CCNA_00148 0.50 +0.6 158,819 + CCNA_00148 0.51 +0.9 158,889 - CCNA_00148 0.64 -0.7 158,901 + CCNA_00148 0.66 +1.1 158,956 + CCNA_00148 0.77 +1.6 158,957 + CCNA_00148 0.77 +1.7 158,964 - CCNA_00148 0.78 -0.6 158,982 - CCNA_00148 0.82 -0.6 159,076 - +0.1 159,078 + +2.6 159,078 + +2.1 159,111 + +3.4 159,119 - CCNA_00149 0.10 -1.4 159,124 + CCNA_00149 0.12 +1.9 159,132 - CCNA_00149 0.16 -0.3 159,166 - CCNA_00149 0.31 -1.3 159,188 + CCNA_00149 0.40 +2.4 159,196 - CCNA_00149 0.44 -0.5 159,203 - CCNA_00149 0.47 +2.4 159,227 + CCNA_00149 0.57 +2.8 159,227 + CCNA_00149 0.57 +2.6 159,227 + CCNA_00149 0.57 +2.4 159,230 - CCNA_00149 0.59 -0.6 159,266 - CCNA_00149 0.75 -2.5 159,279 + CCNA_00149 0.80 +2.6 159,345 + +1.7 159,346 + +1.7 159,346 + +0.9 159,354 - +1.5 159,354 - +1.0 159,370 + +1.3 159,391 - +1.8 159,402 + +0.6
Or see this region's nucleotide sequence