Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS34810

Experiment: Polymyxin B sulfate 0.0625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Polymyxin B sulfate 0.0625 mg/ml
3,412,934	+		BPHYT_RS34805	0.31	-2.9
3,412,934	+		BPHYT_RS34805	0.31	-4.3
3,412,935	-		BPHYT_RS34805	0.32	-2.2
3,412,995	+		BPHYT_RS34805	0.37	-2.4
3,413,018	+		BPHYT_RS34805	0.40	-0.8
3,413,019	-		BPHYT_RS34805	0.40	-1.9
3,413,019	-		BPHYT_RS34805	0.40	-1.3
3,413,097	-		BPHYT_RS34805	0.47	+1.4
3,413,126	+		BPHYT_RS34805	0.50	-0.6
3,413,127	-		BPHYT_RS34805	0.50	-2.2
3,413,210	+		BPHYT_RS34805	0.58	-1.8
3,413,455	+		BPHYT_RS34805	0.82	-1.3
3,413,456	-		BPHYT_RS34805	0.83	-1.7
3,413,456	-		BPHYT_RS34805	0.83	-1.2
3,413,638	+				-2.3
3,413,638	+				-2.9
3,413,638	+				+0.2
3,413,639	-				-0.1
3,413,641	-				-0.3
3,413,641	-				-0.3
3,413,641	-				-0.1
3,413,850	+				-2.6
3,413,850	+				-2.3
3,413,887	+				-1.5
3,413,887	+				-2.4
3,413,937	-		BPHYT_RS34810	0.11	-1.5
3,414,579	+		BPHYT_RS34810	0.36	-1.6
3,414,580	-		BPHYT_RS34810	0.36	-0.9
3,415,016	-		BPHYT_RS34810	0.53	-2.3
3,416,141	+				-1.5
3,416,142	-				-0.6
3,416,143	+				+0.0
3,416,143	+				-2.3
3,416,144	-				-3.0
3,416,152	+				-2.0
3,416,219	-				-2.9
3,416,237	+				-2.2
3,416,237	+				-1.5
3,416,237	+				-1.1
3,416,237	+				-1.6
3,416,237	+				-1.9
3,416,238	-				-1.5
3,416,254	+				-2.3
3,416,254	+				-0.8
3,416,255	-				+0.1
3,416,255	-				-0.3
3,416,305	+				-2.4
3,416,305	+				-1.1
3,416,306	-				-1.1
3,416,393	-				-1.2
3,416,400	+				-0.3
3,416,466	-				-0.7
3,416,466	-				-0.6
3,416,736	+		BPHYT_RS34815	0.45	-0.1
3,416,770	-		BPHYT_RS34815	0.50	-1.4
3,416,807	-		BPHYT_RS34815	0.56	-1.1
3,416,979	+		BPHYT_RS34815	0.85	-2.2