Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33840

Experiment: Polymyxin B sulfate 0.0625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Polymyxin B sulfate 0.0625 mg/ml
3,183,012	-		BPHYT_RS33835	0.54	+0.6
3,183,394	+		BPHYT_RS33835	0.86	-0.1
3,183,394	+		BPHYT_RS33835	0.86	+0.2
3,183,394	+		BPHYT_RS33835	0.86	+0.2
3,183,400	+		BPHYT_RS33835	0.87	-0.6
3,183,400	+		BPHYT_RS33835	0.87	+0.5
3,183,401	-		BPHYT_RS33835	0.87	-0.2
3,183,401	-		BPHYT_RS33835	0.87	-0.1
3,183,711	-				+0.2
3,183,996	+				-0.6
3,184,023	+				-1.9
3,184,023	+				-1.8
3,184,024	-		BPHYT_RS33840	0.10	-1.4
3,184,024	-		BPHYT_RS33840	0.10	-3.0
3,184,024	-		BPHYT_RS33840	0.10	-1.8
3,184,111	-		BPHYT_RS33840	0.16	+0.2
3,184,204	-		BPHYT_RS33840	0.22	-1.5
3,184,298	-		BPHYT_RS33840	0.28	-0.5
3,184,431	+		BPHYT_RS33840	0.36	-2.5
3,184,576	-		BPHYT_RS33840	0.46	-2.5
3,184,771	+		BPHYT_RS33840	0.58	-0.4
3,184,888	-		BPHYT_RS33840	0.66	-2.8
3,185,048	-		BPHYT_RS33840	0.76	-2.5
3,185,048	-		BPHYT_RS33840	0.76	-0.2
3,185,151	+		BPHYT_RS33840	0.83	-3.9
3,185,151	+		BPHYT_RS33840	0.83	-2.6
3,185,151	+		BPHYT_RS33840	0.83	-2.4
3,185,152	-		BPHYT_RS33840	0.83	-2.3
3,185,152	-		BPHYT_RS33840	0.83	-2.4
3,185,152	-		BPHYT_RS33840	0.83	-2.3
3,185,367	+				-0.7
3,185,367	+				-1.1
3,185,367	+				-2.3
3,185,368	-				-2.5
3,185,399	+				-1.8
3,185,399	+				-1.6
3,185,400	-				-1.8
3,185,406	-				-1.8
3,185,524	+				-2.3
3,185,524	+				-1.1
3,185,525	-				+0.5
3,185,525	-				+0.1
3,185,525	-				+0.1
3,185,596	+				-3.2
3,185,597	-				-0.7
3,185,631	+				-2.0
3,185,632	-				-1.4
3,185,924	-		BPHYT_RS33845	0.69	+0.7
3,185,924	-		BPHYT_RS33845	0.69	-0.4
3,185,924	-		BPHYT_RS33845	0.69	-1.8
3,185,924	-		BPHYT_RS33845	0.69	-2.1
3,186,051	+				-2.8
3,186,052	-				-1.1
3,186,087	-				-0.4