Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS30795

Experiment: Polymyxin B sulfate 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS30790 and BPHYT_RS30795 are separated by 177 nucleotidesBPHYT_RS30795 and BPHYT_RS30800 overlap by 4 nucleotides BPHYT_RS30790: BPHYT_RS30790 - porin, at 2,463,352 to 2,464,521 _RS30790 BPHYT_RS30795: BPHYT_RS30795 - short-chain dehydrogenase, at 2,464,699 to 2,465,451 _RS30795 BPHYT_RS30800: BPHYT_RS30800 - MFS transporter, at 2,465,448 to 2,466,731 _RS30800 Position (kb) 2464 2465 2466Strain fitness (log2 ratio) -1 0 1at 2464.051 kb on - strand, within BPHYT_RS30790at 2464.119 kb on - strand, within BPHYT_RS30790at 2464.606 kb on + strandat 2465.067 kb on - strand, within BPHYT_RS30795at 2465.093 kb on + strand, within BPHYT_RS30795at 2465.478 kb on + strandat 2465.881 kb on + strand, within BPHYT_RS30800

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.0625 mg/ml
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2,464,051 - BPHYT_RS30790 0.60 -0.1
2,464,119 - BPHYT_RS30790 0.66 +0.2
2,464,606 + -0.0
2,465,067 - BPHYT_RS30795 0.49 -1.5
2,465,093 + BPHYT_RS30795 0.52 -0.6
2,465,478 + -0.1
2,465,881 + BPHYT_RS30800 0.34 +0.3

Or see this region's nucleotide sequence