Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS27330

Experiment: Polymyxin B sulfate 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS27330 and BPHYT_RS27335 are separated by 72 nucleotides BPHYT_RS27330: BPHYT_RS27330 - hypothetical protein, at 1,707,200 to 1,707,388 _RS27330 BPHYT_RS27335: BPHYT_RS27335 - cytochrome C, at 1,707,461 to 1,708,738 _RS27335 Position (kb) 1707 1708Strain fitness (log2 ratio) -1 0 1at 1706.731 kb on + strandat 1706.763 kb on + strandat 1706.764 kb on - strandat 1707.007 kb on + strandat 1707.122 kb on - strandat 1707.324 kb on + strand, within BPHYT_RS27330at 1707.325 kb on - strand, within BPHYT_RS27330at 1707.415 kb on - strandat 1707.470 kb on - strandat 1707.713 kb on + strand, within BPHYT_RS27335at 1707.839 kb on - strand, within BPHYT_RS27335

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.0625 mg/ml
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1,706,731 + +0.2
1,706,763 + -0.3
1,706,764 - +0.6
1,707,007 + +0.7
1,707,122 - +0.5
1,707,324 + BPHYT_RS27330 0.66 -1.4
1,707,325 - BPHYT_RS27330 0.66 -0.5
1,707,415 - +0.1
1,707,470 - -1.4
1,707,713 + BPHYT_RS27335 0.20 -0.4
1,707,839 - BPHYT_RS27335 0.30 +0.2

Or see this region's nucleotide sequence