Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS20690

Experiment: Polymyxin B sulfate 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS20685 and BPHYT_RS20690 are separated by 2 nucleotidesBPHYT_RS20690 and BPHYT_RS20695 are separated by 138 nucleotides BPHYT_RS20685: BPHYT_RS20685 - ribose ABC transporter ATPase, at 200,712 to 202,325 _RS20685 BPHYT_RS20690: BPHYT_RS20690 - ABC transporter permease, at 202,328 to 203,329 _RS20690 BPHYT_RS20695: BPHYT_RS20695 - ribokinase, at 203,468 to 204,400 _RS20695 Position (kb) 202 203 204Strain fitness (log2 ratio) -1 0 1at 201.330 kb on + strand, within BPHYT_RS20685at 201.331 kb on - strand, within BPHYT_RS20685at 201.457 kb on + strand, within BPHYT_RS20685at 201.501 kb on - strand, within BPHYT_RS20685at 202.062 kb on + strandat 202.063 kb on - strand, within BPHYT_RS20685at 202.488 kb on - strand, within BPHYT_RS20690at 202.816 kb on + strand, within BPHYT_RS20690at 203.299 kb on + strandat 203.426 kb on - strandat 203.426 kb on - strandat 204.167 kb on + strand, within BPHYT_RS20695at 204.167 kb on + strand, within BPHYT_RS20695

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.0625 mg/ml
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201,330 + BPHYT_RS20685 0.38 +0.3
201,331 - BPHYT_RS20685 0.38 -0.0
201,457 + BPHYT_RS20685 0.46 -0.2
201,501 - BPHYT_RS20685 0.49 -0.3
202,062 + +0.3
202,063 - BPHYT_RS20685 0.84 -0.2
202,488 - BPHYT_RS20690 0.16 -0.0
202,816 + BPHYT_RS20690 0.49 -0.7
203,299 + -0.1
203,426 - -0.4
203,426 - -0.1
204,167 + BPHYT_RS20695 0.75 +0.7
204,167 + BPHYT_RS20695 0.75 -0.5

Or see this region's nucleotide sequence