Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS11685

Experiment: Polymyxin B sulfate 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS11685 and BPHYT_RS11690 are separated by 234 nucleotides BPHYT_RS11685: BPHYT_RS11685 - phasin family protein, at 2,650,769 to 2,651,335 _RS11685 BPHYT_RS11690: BPHYT_RS11690 - hypothetical protein, at 2,651,570 to 2,651,767 _RS11690 Position (kb) 2650 2651 2652Strain fitness (log2 ratio) -1 0 1at 2649.854 kb on - strandat 2649.944 kb on + strandat 2649.944 kb on + strandat 2650.171 kb on - strandat 2650.727 kb on - strandat 2650.902 kb on + strand, within BPHYT_RS11685at 2651.662 kb on + strand, within BPHYT_RS11690at 2651.784 kb on - strandat 2651.804 kb on - strandat 2651.900 kb on - strandat 2652.024 kb on + strandat 2652.075 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.0625 mg/ml
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2,649,854 - -0.5
2,649,944 + +0.4
2,649,944 + +0.9
2,650,171 - +0.1
2,650,727 - -0.2
2,650,902 + BPHYT_RS11685 0.23 -1.1
2,651,662 + BPHYT_RS11690 0.46 +0.8
2,651,784 - -0.2
2,651,804 - +0.4
2,651,900 - -0.6
2,652,024 + -0.4
2,652,075 + +0.1

Or see this region's nucleotide sequence