Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS04940

Experiment: Polymyxin B sulfate 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS04930 and BPHYT_RS04935 are separated by 4 nucleotidesBPHYT_RS04935 and BPHYT_RS04940 are separated by 72 nucleotidesBPHYT_RS04940 and BPHYT_RS04945 are separated by 22 nucleotides BPHYT_RS04930: BPHYT_RS04930 - segregation and condensation protein A, at 1,131,909 to 1,132,784 _RS04930 BPHYT_RS04935: BPHYT_RS04935 - hypothetical protein, at 1,132,789 to 1,132,974 _RS04935 BPHYT_RS04940: BPHYT_RS04940 - hypothetical protein, at 1,133,047 to 1,133,277 _RS04940 BPHYT_RS04945: BPHYT_RS04945 - membrane protein, at 1,133,300 to 1,135,135 _RS04945 Position (kb) 1133 1134Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1133.049 kb on - strandat 1133.124 kb on + strand, within BPHYT_RS04940at 1133.234 kb on - strand, within BPHYT_RS04940at 1133.234 kb on - strand, within BPHYT_RS04940at 1133.234 kb on - strand, within BPHYT_RS04940at 1133.376 kb on + strandat 1133.469 kb on - strandat 1133.633 kb on + strand, within BPHYT_RS04945at 1133.634 kb on - strand, within BPHYT_RS04945at 1133.634 kb on - strand, within BPHYT_RS04945at 1133.665 kb on + strand, within BPHYT_RS04945at 1133.888 kb on + strand, within BPHYT_RS04945at 1133.889 kb on - strand, within BPHYT_RS04945at 1133.906 kb on + strand, within BPHYT_RS04945at 1133.906 kb on + strand, within BPHYT_RS04945at 1133.906 kb on + strand, within BPHYT_RS04945at 1133.907 kb on - strand, within BPHYT_RS04945at 1133.907 kb on - strand, within BPHYT_RS04945at 1133.963 kb on + strand, within BPHYT_RS04945at 1133.963 kb on + strand, within BPHYT_RS04945at 1133.963 kb on + strand, within BPHYT_RS04945at 1133.964 kb on - strand, within BPHYT_RS04945at 1133.964 kb on - strand, within BPHYT_RS04945at 1134.003 kb on + strand, within BPHYT_RS04945at 1134.004 kb on - strand, within BPHYT_RS04945at 1134.071 kb on + strand, within BPHYT_RS04945at 1134.125 kb on + strand, within BPHYT_RS04945at 1134.125 kb on + strand, within BPHYT_RS04945at 1134.203 kb on + strand, within BPHYT_RS04945at 1134.204 kb on - strand, within BPHYT_RS04945at 1134.204 kb on - strand, within BPHYT_RS04945at 1134.204 kb on - strand, within BPHYT_RS04945at 1134.210 kb on - strand, within BPHYT_RS04945at 1134.210 kb on - strandat 1134.210 kb on - strand, within BPHYT_RS04945at 1134.210 kb on - strand, within BPHYT_RS04945at 1134.236 kb on + strandat 1134.272 kb on + strand, within BPHYT_RS04945at 1134.272 kb on + strand, within BPHYT_RS04945at 1134.272 kb on + strand, within BPHYT_RS04945at 1134.272 kb on + strand, within BPHYT_RS04945at 1134.272 kb on + strand, within BPHYT_RS04945at 1134.272 kb on + strand, within BPHYT_RS04945

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.0625 mg/ml
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1,133,049 - -0.5
1,133,124 + BPHYT_RS04940 0.33 -0.8
1,133,234 - BPHYT_RS04940 0.81 -2.3
1,133,234 - BPHYT_RS04940 0.81 -2.6
1,133,234 - BPHYT_RS04940 0.81 -2.4
1,133,376 + +0.1
1,133,469 - -2.4
1,133,633 + BPHYT_RS04945 0.18 -2.6
1,133,634 - BPHYT_RS04945 0.18 -2.6
1,133,634 - BPHYT_RS04945 0.18 -2.5
1,133,665 + BPHYT_RS04945 0.20 -3.3
1,133,888 + BPHYT_RS04945 0.32 -2.4
1,133,889 - BPHYT_RS04945 0.32 -2.7
1,133,906 + BPHYT_RS04945 0.33 -2.8
1,133,906 + BPHYT_RS04945 0.33 -4.0
1,133,906 + BPHYT_RS04945 0.33 -2.4
1,133,907 - BPHYT_RS04945 0.33 -2.1
1,133,907 - BPHYT_RS04945 0.33 -0.9
1,133,963 + BPHYT_RS04945 0.36 -2.3
1,133,963 + BPHYT_RS04945 0.36 -2.8
1,133,963 + BPHYT_RS04945 0.36 -1.2
1,133,964 - BPHYT_RS04945 0.36 -2.4
1,133,964 - BPHYT_RS04945 0.36 -4.4
1,134,003 + BPHYT_RS04945 0.38 -2.5
1,134,004 - BPHYT_RS04945 0.38 -2.7
1,134,071 + BPHYT_RS04945 0.42 -2.7
1,134,125 + BPHYT_RS04945 0.45 -2.9
1,134,125 + BPHYT_RS04945 0.45 -2.3
1,134,203 + BPHYT_RS04945 0.49 -2.6
1,134,204 - BPHYT_RS04945 0.49 -4.7
1,134,204 - BPHYT_RS04945 0.49 -3.1
1,134,204 - BPHYT_RS04945 0.49 -2.1
1,134,210 - BPHYT_RS04945 0.50 -0.7
1,134,210 - -1.5
1,134,210 - BPHYT_RS04945 0.50 -1.6
1,134,210 - BPHYT_RS04945 0.50 -2.3
1,134,236 + +0.1
1,134,272 + BPHYT_RS04945 0.53 -2.4
1,134,272 + BPHYT_RS04945 0.53 -2.1
1,134,272 + BPHYT_RS04945 0.53 -1.7
1,134,272 + BPHYT_RS04945 0.53 -3.5
1,134,272 + BPHYT_RS04945 0.53 -3.6
1,134,272 + BPHYT_RS04945 0.53 -2.1

Or see this region's nucleotide sequence