Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS03175

Experiment: Polymyxin B sulfate 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS03170 and BPHYT_RS03175 are separated by 157 nucleotidesBPHYT_RS03175 and BPHYT_RS03180 are separated by 15 nucleotides BPHYT_RS03170: BPHYT_RS03170 - membrane protein, at 710,878 to 711,870 _RS03170 BPHYT_RS03175: BPHYT_RS03175 - sterol-binding protein, at 712,028 to 712,672 _RS03175 BPHYT_RS03180: BPHYT_RS03180 - hypothetical protein, at 712,688 to 714,265 _RS03180 Position (kb) 712 713Strain fitness (log2 ratio) -2 -1 0 1at 711.042 kb on + strand, within BPHYT_RS03170at 711.316 kb on - strand, within BPHYT_RS03170at 711.539 kb on - strand, within BPHYT_RS03170at 711.945 kb on + strandat 711.971 kb on + strandat 711.971 kb on + strandat 711.971 kb on + strandat 711.971 kb on + strandat 711.972 kb on - strandat 712.263 kb on + strand, within BPHYT_RS03175at 712.263 kb on + strand, within BPHYT_RS03175at 712.670 kb on + strandat 712.670 kb on + strandat 712.687 kb on + strandat 712.687 kb on + strandat 712.687 kb on + strandat 712.687 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.0625 mg/ml
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711,042 + BPHYT_RS03170 0.17 -0.2
711,316 - BPHYT_RS03170 0.44 +1.5
711,539 - BPHYT_RS03170 0.67 -0.8
711,945 + +0.1
711,971 + -2.0
711,971 + +0.2
711,971 + -0.8
711,971 + -0.3
711,972 - -0.5
712,263 + BPHYT_RS03175 0.36 -1.3
712,263 + BPHYT_RS03175 0.36 -1.0
712,670 + +0.6
712,670 + -1.1
712,687 + +0.0
712,687 + -0.0
712,687 + +0.2
712,687 + -0.3

Or see this region's nucleotide sequence