Experiment: L-Arginine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004465 and ABIE53_004466 are separated by 462 nucleotides ABIE53_004466 and ABIE53_004467 are separated by 5 nucleotides ABIE53_004467 and ABIE53_004468 are separated by 19 nucleotides
ABIE53_004465: ABIE53_004465 - hypothetical protein, at 655,523 to 656,017
_004465
ABIE53_004466: ABIE53_004466 - hypothetical protein, at 656,480 to 656,767
_004466
ABIE53_004467: ABIE53_004467 - protein phosphatase, at 656,773 to 657,543
_004467
ABIE53_004468: ABIE53_004468 - transcriptional regulator with GAF, ATPase, and Fis domain, at 657,563 to 658,921
_004468
Position (kb) 656
657
658 Strain fitness (log2 ratio) -2
-1
0
1
2 at 655.896 kb on + strand, within ABIE53_004465 at 655.896 kb on + strand, within ABIE53_004465 at 655.896 kb on + strand, within ABIE53_004465 at 655.896 kb on + strand, within ABIE53_004465 at 655.897 kb on - strand, within ABIE53_004465 at 655.897 kb on - strand, within ABIE53_004465 at 655.897 kb on - strand, within ABIE53_004465 at 655.897 kb on - strand, within ABIE53_004465 at 656.125 kb on + strand at 656.304 kb on + strand at 656.305 kb on - strand at 656.371 kb on + strand at 656.420 kb on + strand at 656.420 kb on + strand at 656.421 kb on - strand at 656.488 kb on + strand at 656.488 kb on + strand at 656.488 kb on + strand at 656.489 kb on - strand at 656.594 kb on + strand, within ABIE53_004466 at 656.594 kb on + strand, within ABIE53_004466 at 656.594 kb on + strand, within ABIE53_004466 at 656.594 kb on + strand, within ABIE53_004466 at 656.595 kb on - strand, within ABIE53_004466 at 656.657 kb on + strand, within ABIE53_004466 at 656.657 kb on + strand, within ABIE53_004466 at 656.657 kb on + strand, within ABIE53_004466 at 656.657 kb on + strand, within ABIE53_004466 at 656.657 kb on + strand, within ABIE53_004466 at 656.657 kb on + strand, within ABIE53_004466 at 656.657 kb on + strand, within ABIE53_004466 at 656.657 kb on + strand, within ABIE53_004466 at 656.658 kb on - strand, within ABIE53_004466 at 656.759 kb on - strand at 656.759 kb on - strand at 657.116 kb on - strand, within ABIE53_004467 at 657.116 kb on - strand, within ABIE53_004467 at 657.116 kb on - strand, within ABIE53_004467 at 657.143 kb on - strand, within ABIE53_004467 at 657.222 kb on + strand, within ABIE53_004467 at 657.258 kb on + strand, within ABIE53_004467 at 657.258 kb on + strand, within ABIE53_004467 at 657.258 kb on + strand, within ABIE53_004467 at 657.259 kb on - strand, within ABIE53_004467 at 657.264 kb on + strand, within ABIE53_004467 at 657.265 kb on - strand, within ABIE53_004467 at 657.265 kb on - strand, within ABIE53_004467 at 657.431 kb on + strand, within ABIE53_004467 at 657.432 kb on - strand, within ABIE53_004467 at 657.505 kb on + strand at 657.506 kb on - strand at 657.993 kb on + strand, within ABIE53_004468 at 657.994 kb on - strand, within ABIE53_004468 at 657.994 kb on - strand, within ABIE53_004468 at 657.994 kb on - strand, within ABIE53_004468 at 657.994 kb on - strand, within ABIE53_004468 at 658.149 kb on + strand, within ABIE53_004468 at 658.340 kb on - strand, within ABIE53_004468 at 658.433 kb on + strand, within ABIE53_004468 at 658.434 kb on - strand, within ABIE53_004468 at 658.468 kb on + strand, within ABIE53_004468 at 658.477 kb on + strand, within ABIE53_004468
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (C) remove 655,896 + ABIE53_004465 0.75 -0.4 655,896 + ABIE53_004465 0.75 -0.2 655,896 + ABIE53_004465 0.75 -0.1 655,896 + ABIE53_004465 0.75 -0.2 655,897 - ABIE53_004465 0.76 +0.5 655,897 - ABIE53_004465 0.76 -0.9 655,897 - ABIE53_004465 0.76 +0.1 655,897 - ABIE53_004465 0.76 +0.0 656,125 + -0.8 656,304 + -0.2 656,305 - -0.7 656,371 + +0.5 656,420 + +1.2 656,420 + -0.1 656,421 - +2.0 656,488 + +1.0 656,488 + -2.7 656,488 + +0.7 656,489 - +0.2 656,594 + ABIE53_004466 0.40 +0.4 656,594 + ABIE53_004466 0.40 +1.3 656,594 + ABIE53_004466 0.40 -0.8 656,594 + ABIE53_004466 0.40 -0.2 656,595 - ABIE53_004466 0.40 -0.3 656,657 + ABIE53_004466 0.61 -0.3 656,657 + ABIE53_004466 0.61 +1.2 656,657 + ABIE53_004466 0.61 -0.5 656,657 + ABIE53_004466 0.61 -0.0 656,657 + ABIE53_004466 0.61 +0.3 656,657 + ABIE53_004466 0.61 -1.0 656,657 + ABIE53_004466 0.61 +1.5 656,657 + ABIE53_004466 0.61 +0.5 656,658 - ABIE53_004466 0.62 -1.9 656,759 - +0.6 656,759 - -1.5 657,116 - ABIE53_004467 0.44 -0.8 657,116 - ABIE53_004467 0.44 +0.5 657,116 - ABIE53_004467 0.44 +1.2 657,143 - ABIE53_004467 0.48 +0.2 657,222 + ABIE53_004467 0.58 +1.8 657,258 + ABIE53_004467 0.63 -1.0 657,258 + ABIE53_004467 0.63 +0.3 657,258 + ABIE53_004467 0.63 +0.3 657,259 - ABIE53_004467 0.63 -0.3 657,264 + ABIE53_004467 0.64 +0.6 657,265 - ABIE53_004467 0.64 +1.3 657,265 - ABIE53_004467 0.64 -0.5 657,431 + ABIE53_004467 0.85 -0.3 657,432 - ABIE53_004467 0.85 +2.0 657,505 + -0.7 657,506 - +1.5 657,993 + ABIE53_004468 0.32 +0.4 657,994 - ABIE53_004468 0.32 +0.3 657,994 - ABIE53_004468 0.32 +2.3 657,994 - ABIE53_004468 0.32 -0.9 657,994 - ABIE53_004468 0.32 -0.2 658,149 + ABIE53_004468 0.43 -1.0 658,340 - ABIE53_004468 0.57 -0.5 658,433 + ABIE53_004468 0.64 +0.6 658,434 - ABIE53_004468 0.64 -0.2 658,468 + ABIE53_004468 0.67 -0.2 658,477 + ABIE53_004468 0.67 -1.0
Or see this region's nucleotide sequence