Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_000630

Experiment: L-Arginine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_000629 and ABIE53_000630 are separated by 98 nucleotidesABIE53_000630 and ABIE53_000631 are separated by 71 nucleotidesABIE53_000631 and ABIE53_000632 are separated by 13 nucleotides ABIE53_000629: ABIE53_000629 - LysR family glycine cleavage system transcriptional activator, at 686,830 to 687,846 _000629 ABIE53_000630: ABIE53_000630 - hypothetical protein, at 687,945 to 688,271 _000630 ABIE53_000631: ABIE53_000631 - lipoyl(octanoyl) transferase, at 688,343 to 689,068 _000631 ABIE53_000632: ABIE53_000632 - lipoic acid synthetase, at 689,082 to 690,089 _000632 Position (kb) 687 688 689Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 687.044 kb on + strand, within ABIE53_000629at 687.044 kb on + strand, within ABIE53_000629at 687.044 kb on + strand, within ABIE53_000629at 687.044 kb on + strand, within ABIE53_000629at 687.044 kb on + strand, within ABIE53_000629at 687.044 kb on + strand, within ABIE53_000629at 687.044 kb on + strand, within ABIE53_000629at 687.044 kb on + strand, within ABIE53_000629at 687.045 kb on - strand, within ABIE53_000629at 687.045 kb on - strand, within ABIE53_000629at 687.045 kb on - strand, within ABIE53_000629at 687.045 kb on - strand, within ABIE53_000629at 687.045 kb on - strand, within ABIE53_000629at 687.045 kb on - strand, within ABIE53_000629at 687.045 kb on - strand, within ABIE53_000629at 687.047 kb on + strand, within ABIE53_000629at 687.047 kb on + strand, within ABIE53_000629at 687.047 kb on + strand, within ABIE53_000629at 687.047 kb on + strand, within ABIE53_000629at 687.047 kb on + strand, within ABIE53_000629at 687.047 kb on + strand, within ABIE53_000629at 687.047 kb on + strand, within ABIE53_000629at 687.047 kb on + strand, within ABIE53_000629at 687.048 kb on - strand, within ABIE53_000629at 687.048 kb on - strand, within ABIE53_000629at 687.048 kb on - strand, within ABIE53_000629at 687.048 kb on - strand, within ABIE53_000629at 687.048 kb on - strand, within ABIE53_000629at 687.188 kb on + strand, within ABIE53_000629at 687.188 kb on + strand, within ABIE53_000629at 687.188 kb on + strand, within ABIE53_000629at 687.189 kb on - strand, within ABIE53_000629at 687.189 kb on - strand, within ABIE53_000629at 687.189 kb on - strand, within ABIE53_000629at 687.377 kb on + strand, within ABIE53_000629at 687.377 kb on + strand, within ABIE53_000629at 687.378 kb on - strand, within ABIE53_000629at 687.389 kb on + strand, within ABIE53_000629at 687.389 kb on + strand, within ABIE53_000629at 687.389 kb on + strand, within ABIE53_000629at 687.389 kb on + strand, within ABIE53_000629at 687.389 kb on + strand, within ABIE53_000629at 687.389 kb on + strand, within ABIE53_000629at 687.390 kb on - strand, within ABIE53_000629at 687.390 kb on - strand, within ABIE53_000629at 687.390 kb on - strand, within ABIE53_000629at 687.390 kb on - strand, within ABIE53_000629at 687.390 kb on - strand, within ABIE53_000629at 687.390 kb on - strand, within ABIE53_000629at 687.398 kb on + strand, within ABIE53_000629at 687.496 kb on - strand, within ABIE53_000629at 687.863 kb on + strandat 687.863 kb on + strandat 687.864 kb on - strandat 687.889 kb on + strandat 687.900 kb on + strandat 687.906 kb on + strandat 687.914 kb on + strandat 687.955 kb on + strandat 687.956 kb on - strandat 687.962 kb on + strandat 687.962 kb on + strandat 687.963 kb on - strandat 687.983 kb on + strand, within ABIE53_000630at 688.080 kb on + strand, within ABIE53_000630at 688.080 kb on + strand, within ABIE53_000630at 688.080 kb on + strand, within ABIE53_000630at 688.080 kb on + strand, within ABIE53_000630at 688.080 kb on + strand, within ABIE53_000630at 688.080 kb on + strand, within ABIE53_000630at 688.081 kb on - strand, within ABIE53_000630at 688.081 kb on - strand, within ABIE53_000630at 688.081 kb on - strand, within ABIE53_000630at 688.081 kb on - strand, within ABIE53_000630at 688.081 kb on - strand, within ABIE53_000630at 688.081 kb on - strand, within ABIE53_000630at 688.320 kb on + strandat 688.321 kb on - strandat 688.321 kb on - strandat 688.321 kb on - strandat 688.371 kb on + strandat 688.371 kb on + strandat 688.371 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (C)
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687,044 + ABIE53_000629 0.21 +0.0
687,044 + ABIE53_000629 0.21 -1.3
687,044 + ABIE53_000629 0.21 -0.5
687,044 + ABIE53_000629 0.21 +1.8
687,044 + ABIE53_000629 0.21 +0.2
687,044 + ABIE53_000629 0.21 -0.8
687,044 + ABIE53_000629 0.21 +0.2
687,044 + ABIE53_000629 0.21 +1.1
687,045 - ABIE53_000629 0.21 +1.8
687,045 - ABIE53_000629 0.21 +0.9
687,045 - ABIE53_000629 0.21 +0.8
687,045 - ABIE53_000629 0.21 -0.8
687,045 - ABIE53_000629 0.21 +0.4
687,045 - ABIE53_000629 0.21 +0.4
687,045 - ABIE53_000629 0.21 -1.0
687,047 + ABIE53_000629 0.21 +0.8
687,047 + ABIE53_000629 0.21 +1.2
687,047 + ABIE53_000629 0.21 +0.4
687,047 + ABIE53_000629 0.21 +0.7
687,047 + ABIE53_000629 0.21 +3.8
687,047 + ABIE53_000629 0.21 -1.0
687,047 + ABIE53_000629 0.21 +0.6
687,047 + ABIE53_000629 0.21 +1.4
687,048 - ABIE53_000629 0.21 -0.2
687,048 - ABIE53_000629 0.21 -0.0
687,048 - ABIE53_000629 0.21 +1.2
687,048 - ABIE53_000629 0.21 -0.5
687,048 - ABIE53_000629 0.21 +0.1
687,188 + ABIE53_000629 0.35 +0.4
687,188 + ABIE53_000629 0.35 -0.6
687,188 + ABIE53_000629 0.35 -0.4
687,189 - ABIE53_000629 0.35 +1.3
687,189 - ABIE53_000629 0.35 -0.3
687,189 - ABIE53_000629 0.35 -0.3
687,377 + ABIE53_000629 0.54 -0.0
687,377 + ABIE53_000629 0.54 -0.5
687,378 - ABIE53_000629 0.54 +0.8
687,389 + ABIE53_000629 0.55 -0.6
687,389 + ABIE53_000629 0.55 +0.0
687,389 + ABIE53_000629 0.55 -1.1
687,389 + ABIE53_000629 0.55 +0.2
687,389 + ABIE53_000629 0.55 +0.2
687,389 + ABIE53_000629 0.55 +2.8
687,390 - ABIE53_000629 0.55 +0.0
687,390 - ABIE53_000629 0.55 -0.3
687,390 - ABIE53_000629 0.55 -0.3
687,390 - ABIE53_000629 0.55 +0.8
687,390 - ABIE53_000629 0.55 -0.5
687,390 - ABIE53_000629 0.55 -1.7
687,398 + ABIE53_000629 0.56 +0.5
687,496 - ABIE53_000629 0.65 +0.5
687,863 + +0.2
687,863 + +1.2
687,864 - -0.6
687,889 + -0.4
687,900 + -0.2
687,906 + -0.4
687,914 + +0.7
687,955 + -0.5
687,956 - -0.8
687,962 + +1.8
687,962 + +0.3
687,963 - -0.2
687,983 + ABIE53_000630 0.12 -1.4
688,080 + ABIE53_000630 0.41 +0.0
688,080 + ABIE53_000630 0.41 +0.8
688,080 + ABIE53_000630 0.41 -1.6
688,080 + ABIE53_000630 0.41 +0.5
688,080 + ABIE53_000630 0.41 +0.8
688,080 + ABIE53_000630 0.41 -0.0
688,081 - ABIE53_000630 0.42 +0.1
688,081 - ABIE53_000630 0.42 +1.3
688,081 - ABIE53_000630 0.42 +0.0
688,081 - ABIE53_000630 0.42 -0.3
688,081 - ABIE53_000630 0.42 -0.5
688,081 - ABIE53_000630 0.42 -0.6
688,320 + +0.1
688,321 - -0.8
688,321 - -0.3
688,321 - +0.2
688,371 + -1.6
688,371 + -0.9
688,371 + -1.9

Or see this region's nucleotide sequence