Strain Fitness in Sinorhizobium meliloti 1021 around SMc04866

Experiment: Cobalt chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00285 and SMc04866 are separated by 646 nucleotidesSMc04866 and SMc00286 are separated by 306 nucleotides SMc00285: SMc00285 - transposase ISRM3, at 1,854,027 to 1,855,223 SMc00285 SMc04866: SMc04866 - hypothetical protein, at 1,855,870 to 1,856,193 SMc04866 SMc00286: SMc00286 - hemolysin-type calcium-binding protein, at 1,856,500 to 1,857,591 SMc00286 Position (kb) 1855 1856 1857Strain fitness (log2 ratio) -1 0 1at 1855.345 kb on - strandat 1855.375 kb on - strandat 1855.407 kb on - strandat 1855.408 kb on + strandat 1855.508 kb on + strandat 1855.509 kb on - strandat 1855.509 kb on - strandat 1855.520 kb on - strandat 1855.555 kb on - strandat 1855.732 kb on + strandat 1855.732 kb on + strandat 1855.733 kb on - strandat 1855.772 kb on + strandat 1855.773 kb on - strandat 1855.857 kb on - strandat 1855.857 kb on - strandat 1855.857 kb on - strandat 1855.883 kb on + strandat 1855.889 kb on + strandat 1855.889 kb on + strandat 1855.890 kb on - strandat 1855.890 kb on - strandat 1855.890 kb on - strandat 1855.890 kb on - strandat 1855.936 kb on + strand, within SMc04866at 1856.041 kb on + strand, within SMc04866at 1856.042 kb on - strand, within SMc04866at 1856.042 kb on - strand, within SMc04866at 1856.236 kb on - strandat 1856.238 kb on - strandat 1856.238 kb on - strandat 1856.269 kb on + strandat 1856.269 kb on + strandat 1856.269 kb on + strandat 1856.269 kb on + strandat 1856.270 kb on - strandat 1856.270 kb on - strandat 1856.270 kb on - strandat 1856.323 kb on + strandat 1856.327 kb on + strandat 1856.327 kb on + strandat 1856.327 kb on + strandat 1856.378 kb on - strandat 1856.456 kb on + strandat 1856.457 kb on - strandat 1856.499 kb on + strandat 1856.499 kb on + strandat 1856.500 kb on - strandat 1856.500 kb on - strandat 1856.500 kb on - strandat 1856.626 kb on + strand, within SMc00286at 1856.675 kb on - strand, within SMc00286

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM
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1,855,345 - +0.0
1,855,375 - -0.0
1,855,407 - -0.1
1,855,408 + -0.5
1,855,508 + +1.0
1,855,509 - +0.1
1,855,509 - +0.1
1,855,520 - -0.7
1,855,555 - +0.1
1,855,732 + +0.5
1,855,732 + +0.5
1,855,733 - -1.6
1,855,772 + -0.2
1,855,773 - -0.9
1,855,857 - +0.2
1,855,857 - +0.2
1,855,857 - -0.3
1,855,883 + +0.1
1,855,889 + -0.4
1,855,889 + -0.2
1,855,890 - -0.4
1,855,890 - -0.0
1,855,890 - +0.4
1,855,890 - +1.0
1,855,936 + SMc04866 0.20 -0.6
1,856,041 + SMc04866 0.53 -1.6
1,856,042 - SMc04866 0.53 -0.2
1,856,042 - SMc04866 0.53 -0.5
1,856,236 - +0.1
1,856,238 - +0.1
1,856,238 - +0.1
1,856,269 + -0.5
1,856,269 + -0.9
1,856,269 + -1.6
1,856,269 + -0.0
1,856,270 - +0.0
1,856,270 - +0.0
1,856,270 - +0.2
1,856,323 + +0.3
1,856,327 + -0.2
1,856,327 + +0.6
1,856,327 + -0.4
1,856,378 - +0.8
1,856,456 + -0.4
1,856,457 - -1.0
1,856,499 + -0.0
1,856,499 + +0.6
1,856,500 - +0.8
1,856,500 - -0.4
1,856,500 - +0.0
1,856,626 + SMc00286 0.12 +0.2
1,856,675 - SMc00286 0.16 -0.1

Or see this region's nucleotide sequence