Experiment: Cobalt chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00285 and SMc04866 are separated by 646 nucleotides SMc04866 and SMc00286 are separated by 306 nucleotides
SMc00285: SMc00285 - transposase ISRM3, at 1,854,027 to 1,855,223
SMc00285
SMc04866: SMc04866 - hypothetical protein, at 1,855,870 to 1,856,193
SMc04866
SMc00286: SMc00286 - hemolysin-type calcium-binding protein, at 1,856,500 to 1,857,591
SMc00286
Position (kb)
1855
1856
1857 Strain fitness (log2 ratio)
-1
0
1 at 1855.345 kb on - strand at 1855.375 kb on - strand at 1855.407 kb on - strand at 1855.408 kb on + strand at 1855.508 kb on + strand at 1855.509 kb on - strand at 1855.509 kb on - strand at 1855.520 kb on - strand at 1855.555 kb on - strand at 1855.732 kb on + strand at 1855.732 kb on + strand at 1855.733 kb on - strand at 1855.772 kb on + strand at 1855.773 kb on - strand at 1855.857 kb on - strand at 1855.857 kb on - strand at 1855.857 kb on - strand at 1855.883 kb on + strand at 1855.889 kb on + strand at 1855.889 kb on + strand at 1855.890 kb on - strand at 1855.890 kb on - strand at 1855.890 kb on - strand at 1855.890 kb on - strand at 1855.936 kb on + strand, within SMc04866 at 1856.041 kb on + strand, within SMc04866 at 1856.042 kb on - strand, within SMc04866 at 1856.042 kb on - strand, within SMc04866 at 1856.236 kb on - strand at 1856.238 kb on - strand at 1856.238 kb on - strand at 1856.269 kb on + strand at 1856.269 kb on + strand at 1856.269 kb on + strand at 1856.269 kb on + strand at 1856.270 kb on - strand at 1856.270 kb on - strand at 1856.270 kb on - strand at 1856.323 kb on + strand at 1856.327 kb on + strand at 1856.327 kb on + strand at 1856.327 kb on + strand at 1856.378 kb on - strand at 1856.456 kb on + strand at 1856.457 kb on - strand at 1856.499 kb on + strand at 1856.499 kb on + strand at 1856.500 kb on - strand at 1856.500 kb on - strand at 1856.500 kb on - strand at 1856.626 kb on + strand, within SMc00286 at 1856.675 kb on - strand, within SMc00286
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM remove 1,855,345 - +0.0 1,855,375 - -0.0 1,855,407 - -0.1 1,855,408 + -0.5 1,855,508 + +1.0 1,855,509 - +0.1 1,855,509 - +0.1 1,855,520 - -0.7 1,855,555 - +0.1 1,855,732 + +0.5 1,855,732 + +0.5 1,855,733 - -1.6 1,855,772 + -0.2 1,855,773 - -0.9 1,855,857 - +0.2 1,855,857 - +0.2 1,855,857 - -0.3 1,855,883 + +0.1 1,855,889 + -0.4 1,855,889 + -0.2 1,855,890 - -0.4 1,855,890 - -0.0 1,855,890 - +0.4 1,855,890 - +1.0 1,855,936 + SMc04866 0.20 -0.6 1,856,041 + SMc04866 0.53 -1.6 1,856,042 - SMc04866 0.53 -0.2 1,856,042 - SMc04866 0.53 -0.5 1,856,236 - +0.1 1,856,238 - +0.1 1,856,238 - +0.1 1,856,269 + -0.5 1,856,269 + -0.9 1,856,269 + -1.6 1,856,269 + -0.0 1,856,270 - +0.0 1,856,270 - +0.0 1,856,270 - +0.2 1,856,323 + +0.3 1,856,327 + -0.2 1,856,327 + +0.6 1,856,327 + -0.4 1,856,378 - +0.8 1,856,456 + -0.4 1,856,457 - -1.0 1,856,499 + -0.0 1,856,499 + +0.6 1,856,500 - +0.8 1,856,500 - -0.4 1,856,500 - +0.0 1,856,626 + SMc00286 0.12 +0.2 1,856,675 - SMc00286 0.16 -0.1
Or see this region's nucleotide sequence