Strain Fitness in Sinorhizobium meliloti 1021 around SMc04203

Experiment: Cobalt chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc04202 and SMc04203 are separated by 526 nucleotidesSMc04203 and SMc04204 overlap by 11 nucleotides SMc04202: SMc04202 - transmembrane protein, at 2,187,335 to 2,188,165 SMc04202 SMc04203: SMc04203 - RNA polymerase sigma factor FECI protein, at 2,188,692 to 2,189,171 SMc04203 SMc04204: SMc04204 - iron transport regulator transmembrane protein, at 2,189,161 to 2,190,225 SMc04204 Position (kb) 2188 2189 2190Strain fitness (log2 ratio) -2 -1 0 1at 2188.295 kb on + strandat 2188.295 kb on + strandat 2188.295 kb on + strandat 2188.327 kb on + strandat 2188.328 kb on - strandat 2188.328 kb on - strandat 2188.328 kb on - strandat 2188.363 kb on - strandat 2188.363 kb on - strandat 2188.386 kb on + strandat 2188.386 kb on + strandat 2188.386 kb on + strandat 2188.386 kb on + strandat 2188.386 kb on + strandat 2188.386 kb on + strandat 2188.386 kb on + strandat 2188.387 kb on - strandat 2188.387 kb on - strandat 2188.387 kb on - strandat 2188.387 kb on - strandat 2188.396 kb on + strandat 2188.396 kb on + strandat 2188.396 kb on + strandat 2188.397 kb on - strandat 2188.397 kb on - strandat 2188.397 kb on - strandat 2188.397 kb on - strandat 2188.398 kb on + strandat 2188.398 kb on + strandat 2188.399 kb on - strandat 2188.399 kb on - strandat 2188.399 kb on - strandat 2188.399 kb on - strandat 2188.399 kb on - strandat 2188.568 kb on + strandat 2188.568 kb on + strandat 2188.568 kb on + strandat 2188.568 kb on + strandat 2188.569 kb on - strandat 2188.569 kb on - strandat 2188.575 kb on - strandat 2188.575 kb on - strandat 2188.575 kb on - strandat 2188.647 kb on - strandat 2188.695 kb on + strandat 2188.695 kb on + strandat 2188.695 kb on + strandat 2188.695 kb on + strandat 2188.696 kb on - strandat 2188.725 kb on + strandat 2188.726 kb on - strandat 2188.783 kb on - strand, within SMc04203at 2188.783 kb on - strand, within SMc04203at 2188.783 kb on - strand, within SMc04203at 2188.833 kb on + strand, within SMc04203at 2188.833 kb on + strand, within SMc04203at 2188.833 kb on + strand, within SMc04203at 2188.917 kb on - strand, within SMc04203at 2188.918 kb on + strand, within SMc04203at 2188.919 kb on - strand, within SMc04203at 2188.919 kb on - strand, within SMc04203at 2188.920 kb on - strand, within SMc04203at 2189.047 kb on - strand, within SMc04203at 2189.180 kb on + strandat 2189.180 kb on + strandat 2189.212 kb on + strandat 2189.277 kb on + strand, within SMc04204at 2189.277 kb on + strand, within SMc04204at 2189.278 kb on - strand, within SMc04204at 2189.728 kb on + strand, within SMc04204at 2189.826 kb on + strand, within SMc04204at 2189.843 kb on + strand, within SMc04204at 2189.844 kb on - strand, within SMc04204at 2189.844 kb on - strand, within SMc04204at 2189.952 kb on + strand, within SMc04204at 2189.952 kb on + strand, within SMc04204at 2189.952 kb on + strand, within SMc04204at 2189.952 kb on + strand, within SMc04204at 2189.952 kb on + strand, within SMc04204at 2189.983 kb on - strand, within SMc04204at 2190.110 kb on + strand, within SMc04204at 2190.122 kb on - strandat 2190.122 kb on - strandat 2190.122 kb on - strandat 2190.122 kb on - strandat 2190.169 kb on + strandat 2190.170 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM
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2,188,295 + +0.3
2,188,295 + +0.1
2,188,295 + +0.8
2,188,327 + +0.6
2,188,328 - +0.6
2,188,328 - -0.1
2,188,328 - +0.1
2,188,363 - -0.4
2,188,363 - +0.3
2,188,386 + +1.0
2,188,386 + +0.8
2,188,386 + +0.4
2,188,386 + -0.8
2,188,386 + +0.7
2,188,386 + +0.2
2,188,386 + +0.2
2,188,387 - +0.3
2,188,387 - +0.5
2,188,387 - +0.0
2,188,387 - +0.1
2,188,396 + -1.6
2,188,396 + +0.7
2,188,396 + +1.0
2,188,397 - -0.4
2,188,397 - +0.0
2,188,397 - +1.7
2,188,397 - -0.5
2,188,398 + -0.0
2,188,398 + -0.2
2,188,399 - -0.3
2,188,399 - -1.2
2,188,399 - +0.7
2,188,399 - -0.9
2,188,399 - -0.1
2,188,568 + -0.5
2,188,568 + -1.2
2,188,568 + +0.6
2,188,568 + -0.3
2,188,569 - -0.3
2,188,569 - +0.2
2,188,575 - +0.1
2,188,575 - +0.3
2,188,575 - -1.1
2,188,647 - -0.9
2,188,695 + +0.9
2,188,695 + +0.7
2,188,695 + -0.6
2,188,695 + +0.1
2,188,696 - +0.0
2,188,725 + -0.9
2,188,726 - +0.0
2,188,783 - SMc04203 0.19 +0.1
2,188,783 - SMc04203 0.19 -0.1
2,188,783 - SMc04203 0.19 -0.6
2,188,833 + SMc04203 0.29 -1.7
2,188,833 + SMc04203 0.29 -0.0
2,188,833 + SMc04203 0.29 -2.2
2,188,917 - SMc04203 0.47 -2.1
2,188,918 + SMc04203 0.47 -1.0
2,188,919 - SMc04203 0.47 -0.8
2,188,919 - SMc04203 0.47 -0.1
2,188,920 - SMc04203 0.47 -1.1
2,189,047 - SMc04203 0.74 -0.5
2,189,180 + -0.3
2,189,180 + -0.6
2,189,212 + -0.3
2,189,277 + SMc04204 0.11 -0.2
2,189,277 + SMc04204 0.11 -0.2
2,189,278 - SMc04204 0.11 +0.9
2,189,728 + SMc04204 0.53 -0.6
2,189,826 + SMc04204 0.62 -0.0
2,189,843 + SMc04204 0.64 +0.0
2,189,844 - SMc04204 0.64 +0.4
2,189,844 - SMc04204 0.64 -0.1
2,189,952 + SMc04204 0.74 -0.3
2,189,952 + SMc04204 0.74 -0.9
2,189,952 + SMc04204 0.74 -0.7
2,189,952 + SMc04204 0.74 -0.7
2,189,952 + SMc04204 0.74 -0.2
2,189,983 - SMc04204 0.77 +0.6
2,190,110 + SMc04204 0.89 +0.0
2,190,122 - -0.5
2,190,122 - -0.3
2,190,122 - +0.9
2,190,122 - +0.3
2,190,169 + +1.0
2,190,170 - -1.0

Or see this region's nucleotide sequence