Experiment: Cobalt chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04202 and SMc04203 are separated by 526 nucleotides SMc04203 and SMc04204 overlap by 11 nucleotides
SMc04202: SMc04202 - transmembrane protein, at 2,187,335 to 2,188,165
SMc04202
SMc04203: SMc04203 - RNA polymerase sigma factor FECI protein, at 2,188,692 to 2,189,171
SMc04203
SMc04204: SMc04204 - iron transport regulator transmembrane protein, at 2,189,161 to 2,190,225
SMc04204
Position (kb)
2188
2189
2190 Strain fitness (log2 ratio)
-2
-1
0
1 at 2188.295 kb on + strand at 2188.295 kb on + strand at 2188.295 kb on + strand at 2188.327 kb on + strand at 2188.328 kb on - strand at 2188.328 kb on - strand at 2188.328 kb on - strand at 2188.363 kb on - strand at 2188.363 kb on - strand at 2188.386 kb on + strand at 2188.386 kb on + strand at 2188.386 kb on + strand at 2188.386 kb on + strand at 2188.386 kb on + strand at 2188.386 kb on + strand at 2188.386 kb on + strand at 2188.387 kb on - strand at 2188.387 kb on - strand at 2188.387 kb on - strand at 2188.387 kb on - strand at 2188.396 kb on + strand at 2188.396 kb on + strand at 2188.396 kb on + strand at 2188.397 kb on - strand at 2188.397 kb on - strand at 2188.397 kb on - strand at 2188.397 kb on - strand at 2188.398 kb on + strand at 2188.398 kb on + strand at 2188.399 kb on - strand at 2188.399 kb on - strand at 2188.399 kb on - strand at 2188.399 kb on - strand at 2188.399 kb on - strand at 2188.568 kb on + strand at 2188.568 kb on + strand at 2188.568 kb on + strand at 2188.568 kb on + strand at 2188.569 kb on - strand at 2188.569 kb on - strand at 2188.575 kb on - strand at 2188.575 kb on - strand at 2188.575 kb on - strand at 2188.647 kb on - strand at 2188.695 kb on + strand at 2188.695 kb on + strand at 2188.695 kb on + strand at 2188.695 kb on + strand at 2188.696 kb on - strand at 2188.725 kb on + strand at 2188.726 kb on - strand at 2188.783 kb on - strand, within SMc04203 at 2188.783 kb on - strand, within SMc04203 at 2188.783 kb on - strand, within SMc04203 at 2188.833 kb on + strand, within SMc04203 at 2188.833 kb on + strand, within SMc04203 at 2188.833 kb on + strand, within SMc04203 at 2188.917 kb on - strand, within SMc04203 at 2188.918 kb on + strand, within SMc04203 at 2188.919 kb on - strand, within SMc04203 at 2188.919 kb on - strand, within SMc04203 at 2188.920 kb on - strand, within SMc04203 at 2189.047 kb on - strand, within SMc04203 at 2189.180 kb on + strand at 2189.180 kb on + strand at 2189.212 kb on + strand at 2189.277 kb on + strand, within SMc04204 at 2189.277 kb on + strand, within SMc04204 at 2189.278 kb on - strand, within SMc04204 at 2189.728 kb on + strand, within SMc04204 at 2189.826 kb on + strand, within SMc04204 at 2189.843 kb on + strand, within SMc04204 at 2189.844 kb on - strand, within SMc04204 at 2189.844 kb on - strand, within SMc04204 at 2189.952 kb on + strand, within SMc04204 at 2189.952 kb on + strand, within SMc04204 at 2189.952 kb on + strand, within SMc04204 at 2189.952 kb on + strand, within SMc04204 at 2189.952 kb on + strand, within SMc04204 at 2189.983 kb on - strand, within SMc04204 at 2190.110 kb on + strand, within SMc04204 at 2190.122 kb on - strand at 2190.122 kb on - strand at 2190.122 kb on - strand at 2190.122 kb on - strand at 2190.169 kb on + strand at 2190.170 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM remove 2,188,295 + +0.3 2,188,295 + +0.1 2,188,295 + +0.8 2,188,327 + +0.6 2,188,328 - +0.6 2,188,328 - -0.1 2,188,328 - +0.1 2,188,363 - -0.4 2,188,363 - +0.3 2,188,386 + +1.0 2,188,386 + +0.8 2,188,386 + +0.4 2,188,386 + -0.8 2,188,386 + +0.7 2,188,386 + +0.2 2,188,386 + +0.2 2,188,387 - +0.3 2,188,387 - +0.5 2,188,387 - +0.0 2,188,387 - +0.1 2,188,396 + -1.6 2,188,396 + +0.7 2,188,396 + +1.0 2,188,397 - -0.4 2,188,397 - +0.0 2,188,397 - +1.7 2,188,397 - -0.5 2,188,398 + -0.0 2,188,398 + -0.2 2,188,399 - -0.3 2,188,399 - -1.2 2,188,399 - +0.7 2,188,399 - -0.9 2,188,399 - -0.1 2,188,568 + -0.5 2,188,568 + -1.2 2,188,568 + +0.6 2,188,568 + -0.3 2,188,569 - -0.3 2,188,569 - +0.2 2,188,575 - +0.1 2,188,575 - +0.3 2,188,575 - -1.1 2,188,647 - -0.9 2,188,695 + +0.9 2,188,695 + +0.7 2,188,695 + -0.6 2,188,695 + +0.1 2,188,696 - +0.0 2,188,725 + -0.9 2,188,726 - +0.0 2,188,783 - SMc04203 0.19 +0.1 2,188,783 - SMc04203 0.19 -0.1 2,188,783 - SMc04203 0.19 -0.6 2,188,833 + SMc04203 0.29 -1.7 2,188,833 + SMc04203 0.29 -0.0 2,188,833 + SMc04203 0.29 -2.2 2,188,917 - SMc04203 0.47 -2.1 2,188,918 + SMc04203 0.47 -1.0 2,188,919 - SMc04203 0.47 -0.8 2,188,919 - SMc04203 0.47 -0.1 2,188,920 - SMc04203 0.47 -1.1 2,189,047 - SMc04203 0.74 -0.5 2,189,180 + -0.3 2,189,180 + -0.6 2,189,212 + -0.3 2,189,277 + SMc04204 0.11 -0.2 2,189,277 + SMc04204 0.11 -0.2 2,189,278 - SMc04204 0.11 +0.9 2,189,728 + SMc04204 0.53 -0.6 2,189,826 + SMc04204 0.62 -0.0 2,189,843 + SMc04204 0.64 +0.0 2,189,844 - SMc04204 0.64 +0.4 2,189,844 - SMc04204 0.64 -0.1 2,189,952 + SMc04204 0.74 -0.3 2,189,952 + SMc04204 0.74 -0.9 2,189,952 + SMc04204 0.74 -0.7 2,189,952 + SMc04204 0.74 -0.7 2,189,952 + SMc04204 0.74 -0.2 2,189,983 - SMc04204 0.77 +0.6 2,190,110 + SMc04204 0.89 +0.0 2,190,122 - -0.5 2,190,122 - -0.3 2,190,122 - +0.9 2,190,122 - +0.3 2,190,169 + +1.0 2,190,170 - -1.0
Or see this region's nucleotide sequence