Experiment: Cobalt chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03883 and SMc03884 are separated by 150 nucleotides SMc03884 and SMc03885 are separated by 4 nucleotides
SMc03883: SMc03883 - monofunctional biosynthetic peptidoglycan transglycosylase, at 3,549,686 to 3,550,474
SMc03883
SMc03884: SMc03884 - geranyltranstransferase, at 3,550,625 to 3,551,539
SMc03884
SMc03885: SMc03885 - histidinol-phosphate aminotransferase, at 3,551,544 to 3,552,599
SMc03885
Position (kb)
3550
3551
3552 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3549.687 kb on + strand at 3549.687 kb on + strand at 3549.688 kb on - strand at 3549.688 kb on - strand at 3549.693 kb on + strand at 3549.706 kb on + strand at 3549.706 kb on + strand at 3549.706 kb on + strand at 3549.706 kb on + strand at 3549.706 kb on + strand at 3549.706 kb on + strand at 3549.706 kb on + strand at 3549.706 kb on + strand at 3549.707 kb on - strand at 3549.707 kb on - strand at 3549.707 kb on - strand at 3549.707 kb on - strand at 3549.891 kb on + strand, within SMc03883 at 3549.891 kb on + strand, within SMc03883 at 3549.892 kb on - strand, within SMc03883 at 3549.892 kb on - strand, within SMc03883 at 3549.893 kb on + strand, within SMc03883 at 3549.893 kb on + strand, within SMc03883 at 3549.894 kb on - strand, within SMc03883 at 3549.894 kb on - strand, within SMc03883 at 3549.980 kb on + strand, within SMc03883 at 3549.980 kb on + strand, within SMc03883 at 3550.218 kb on + strand, within SMc03883 at 3550.284 kb on + strand, within SMc03883 at 3550.302 kb on + strand, within SMc03883 at 3550.303 kb on - strand, within SMc03883 at 3550.487 kb on - strand at 3550.624 kb on + strand at 3551.586 kb on + strand at 3551.586 kb on + strand at 3551.855 kb on - strand, within SMc03885 at 3551.884 kb on - strand, within SMc03885 at 3551.893 kb on - strand, within SMc03885 at 3551.893 kb on - strand, within SMc03885 at 3551.893 kb on - strand, within SMc03885 at 3552.093 kb on + strand, within SMc03885 at 3552.093 kb on + strand, within SMc03885 at 3552.093 kb on + strand, within SMc03885 at 3552.093 kb on + strand, within SMc03885 at 3552.094 kb on - strand, within SMc03885 at 3552.094 kb on - strand, within SMc03885 at 3552.094 kb on - strand, within SMc03885 at 3552.095 kb on + strand, within SMc03885 at 3552.139 kb on - strand, within SMc03885
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM remove 3,549,687 + -1.2 3,549,687 + -1.9 3,549,688 - -0.3 3,549,688 - +0.4 3,549,693 + -0.5 3,549,706 + -0.2 3,549,706 + +2.9 3,549,706 + -0.2 3,549,706 + +1.2 3,549,706 + -0.7 3,549,706 + -0.3 3,549,706 + -0.3 3,549,706 + +0.8 3,549,707 - +0.3 3,549,707 - +0.1 3,549,707 - -0.0 3,549,707 - -0.2 3,549,891 + SMc03883 0.26 +0.3 3,549,891 + SMc03883 0.26 +0.6 3,549,892 - SMc03883 0.26 -0.6 3,549,892 - SMc03883 0.26 -0.3 3,549,893 + SMc03883 0.26 +0.3 3,549,893 + SMc03883 0.26 +0.7 3,549,894 - SMc03883 0.26 -0.0 3,549,894 - SMc03883 0.26 -0.3 3,549,980 + SMc03883 0.37 -1.1 3,549,980 + SMc03883 0.37 -0.6 3,550,218 + SMc03883 0.67 -0.4 3,550,284 + SMc03883 0.76 +0.1 3,550,302 + SMc03883 0.78 -1.0 3,550,303 - SMc03883 0.78 -0.8 3,550,487 - -0.9 3,550,624 + +0.4 3,551,586 + -0.5 3,551,586 + -1.8 3,551,855 - SMc03885 0.29 -0.2 3,551,884 - SMc03885 0.32 -0.7 3,551,893 - SMc03885 0.33 -0.2 3,551,893 - SMc03885 0.33 -0.0 3,551,893 - SMc03885 0.33 -0.3 3,552,093 + SMc03885 0.52 -0.2 3,552,093 + SMc03885 0.52 -1.4 3,552,093 + SMc03885 0.52 -0.7 3,552,093 + SMc03885 0.52 +0.8 3,552,094 - SMc03885 0.52 -0.8 3,552,094 - SMc03885 0.52 -0.4 3,552,094 - SMc03885 0.52 +0.2 3,552,095 + SMc03885 0.52 +0.0 3,552,139 - SMc03885 0.56 -0.3
Or see this region's nucleotide sequence