Strain Fitness in Sinorhizobium meliloti 1021 around SMc03798

Experiment: Cobalt chloride 0.16 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc03797 and SMc03798 are separated by 80 nucleotidesSMc03798 and SMc03799 are separated by 288 nucleotides SMc03797: SMc03797 - homoserine O-succinyltransferase, at 3,461,839 to 3,462,834 SMc03797 SMc03798: SMc03798 - aldose 1-epimerase, at 3,462,915 to 3,463,931 SMc03798 SMc03799: SMc03799 - hypothetical protein, at 3,464,220 to 3,465,209 SMc03799 Position (kb) 3462 3463 3464Strain fitness (log2 ratio) -2 -1 0 1 2at 3461.921 kb on + strandat 3462.006 kb on - strand, within SMc03797at 3462.006 kb on - strand, within SMc03797at 3462.006 kb on - strand, within SMc03797at 3462.173 kb on - strand, within SMc03797at 3462.173 kb on - strand, within SMc03797at 3462.173 kb on - strand, within SMc03797at 3462.173 kb on - strand, within SMc03797at 3462.355 kb on + strand, within SMc03797at 3462.442 kb on + strand, within SMc03797at 3462.442 kb on + strand, within SMc03797at 3462.572 kb on + strand, within SMc03797at 3462.573 kb on - strand, within SMc03797at 3462.599 kb on - strand, within SMc03797at 3462.599 kb on - strand, within SMc03797at 3462.599 kb on - strand, within SMc03797at 3462.647 kb on - strand, within SMc03797at 3462.694 kb on + strand, within SMc03797at 3462.695 kb on - strand, within SMc03797at 3462.784 kb on + strandat 3462.800 kb on - strandat 3462.964 kb on + strandat 3462.964 kb on + strandat 3462.965 kb on - strandat 3463.110 kb on + strand, within SMc03798at 3463.111 kb on - strand, within SMc03798at 3463.183 kb on - strand, within SMc03798at 3463.285 kb on + strand, within SMc03798at 3463.286 kb on - strand, within SMc03798at 3463.353 kb on + strand, within SMc03798at 3463.354 kb on - strand, within SMc03798at 3463.440 kb on + strand, within SMc03798at 3463.441 kb on - strand, within SMc03798at 3463.441 kb on - strand, within SMc03798at 3463.503 kb on + strand, within SMc03798at 3463.504 kb on - strand, within SMc03798at 3463.504 kb on - strand, within SMc03798at 3463.624 kb on - strand, within SMc03798at 3463.681 kb on + strand, within SMc03798at 3463.765 kb on + strand, within SMc03798at 3463.912 kb on - strandat 3464.005 kb on + strandat 3464.036 kb on + strandat 3464.181 kb on + strandat 3464.182 kb on - strandat 3464.506 kb on + strand, within SMc03799at 3464.600 kb on + strand, within SMc03799at 3464.600 kb on + strand, within SMc03799at 3464.601 kb on - strand, within SMc03799

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM
remove
3,461,921 + -0.1
3,462,006 - SMc03797 0.17 +0.1
3,462,006 - SMc03797 0.17 -0.2
3,462,006 - SMc03797 0.17 +0.2
3,462,173 - SMc03797 0.34 -0.2
3,462,173 - SMc03797 0.34 +0.1
3,462,173 - SMc03797 0.34 +0.2
3,462,173 - SMc03797 0.34 -0.3
3,462,355 + SMc03797 0.52 -0.3
3,462,442 + SMc03797 0.61 -0.3
3,462,442 + SMc03797 0.61 -0.0
3,462,572 + SMc03797 0.74 +0.2
3,462,573 - SMc03797 0.74 +0.2
3,462,599 - SMc03797 0.76 -0.2
3,462,599 - SMc03797 0.76 -0.9
3,462,599 - SMc03797 0.76 -0.0
3,462,647 - SMc03797 0.81 +0.9
3,462,694 + SMc03797 0.86 +0.2
3,462,695 - SMc03797 0.86 +0.3
3,462,784 + +0.6
3,462,800 - -0.6
3,462,964 + -1.3
3,462,964 + +1.1
3,462,965 - +1.9
3,463,110 + SMc03798 0.19 -1.0
3,463,111 - SMc03798 0.19 +0.3
3,463,183 - SMc03798 0.26 +0.7
3,463,285 + SMc03798 0.36 +0.4
3,463,286 - SMc03798 0.36 +1.0
3,463,353 + SMc03798 0.43 -0.4
3,463,354 - SMc03798 0.43 +0.9
3,463,440 + SMc03798 0.52 -1.3
3,463,441 - SMc03798 0.52 +0.1
3,463,441 - SMc03798 0.52 -0.5
3,463,503 + SMc03798 0.58 -2.0
3,463,504 - SMc03798 0.58 +0.5
3,463,504 - SMc03798 0.58 +0.7
3,463,624 - SMc03798 0.70 +0.4
3,463,681 + SMc03798 0.75 -0.1
3,463,765 + SMc03798 0.84 -0.2
3,463,912 - -0.7
3,464,005 + -0.6
3,464,036 + -0.5
3,464,181 + -0.5
3,464,182 - -0.2
3,464,506 + SMc03799 0.29 +1.3
3,464,600 + SMc03799 0.38 +1.0
3,464,600 + SMc03799 0.38 +0.0
3,464,601 - SMc03799 0.38 -0.6

Or see this region's nucleotide sequence