Experiment: Cobalt chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03797 and SMc03798 are separated by 80 nucleotides SMc03798 and SMc03799 are separated by 288 nucleotides
SMc03797: SMc03797 - homoserine O-succinyltransferase, at 3,461,839 to 3,462,834
SMc03797
SMc03798: SMc03798 - aldose 1-epimerase, at 3,462,915 to 3,463,931
SMc03798
SMc03799: SMc03799 - hypothetical protein, at 3,464,220 to 3,465,209
SMc03799
Position (kb)
3462
3463
3464 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3461.921 kb on + strand at 3462.006 kb on - strand, within SMc03797 at 3462.006 kb on - strand, within SMc03797 at 3462.006 kb on - strand, within SMc03797 at 3462.173 kb on - strand, within SMc03797 at 3462.173 kb on - strand, within SMc03797 at 3462.173 kb on - strand, within SMc03797 at 3462.173 kb on - strand, within SMc03797 at 3462.355 kb on + strand, within SMc03797 at 3462.442 kb on + strand, within SMc03797 at 3462.442 kb on + strand, within SMc03797 at 3462.572 kb on + strand, within SMc03797 at 3462.573 kb on - strand, within SMc03797 at 3462.599 kb on - strand, within SMc03797 at 3462.599 kb on - strand, within SMc03797 at 3462.599 kb on - strand, within SMc03797 at 3462.647 kb on - strand, within SMc03797 at 3462.694 kb on + strand, within SMc03797 at 3462.695 kb on - strand, within SMc03797 at 3462.784 kb on + strand at 3462.800 kb on - strand at 3462.964 kb on + strand at 3462.964 kb on + strand at 3462.965 kb on - strand at 3463.110 kb on + strand, within SMc03798 at 3463.111 kb on - strand, within SMc03798 at 3463.183 kb on - strand, within SMc03798 at 3463.285 kb on + strand, within SMc03798 at 3463.286 kb on - strand, within SMc03798 at 3463.353 kb on + strand, within SMc03798 at 3463.354 kb on - strand, within SMc03798 at 3463.440 kb on + strand, within SMc03798 at 3463.441 kb on - strand, within SMc03798 at 3463.441 kb on - strand, within SMc03798 at 3463.503 kb on + strand, within SMc03798 at 3463.504 kb on - strand, within SMc03798 at 3463.504 kb on - strand, within SMc03798 at 3463.624 kb on - strand, within SMc03798 at 3463.681 kb on + strand, within SMc03798 at 3463.765 kb on + strand, within SMc03798 at 3463.912 kb on - strand at 3464.005 kb on + strand at 3464.036 kb on + strand at 3464.181 kb on + strand at 3464.182 kb on - strand at 3464.506 kb on + strand, within SMc03799 at 3464.600 kb on + strand, within SMc03799 at 3464.600 kb on + strand, within SMc03799 at 3464.601 kb on - strand, within SMc03799
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM remove 3,461,921 + -0.1 3,462,006 - SMc03797 0.17 +0.1 3,462,006 - SMc03797 0.17 -0.2 3,462,006 - SMc03797 0.17 +0.2 3,462,173 - SMc03797 0.34 -0.2 3,462,173 - SMc03797 0.34 +0.1 3,462,173 - SMc03797 0.34 +0.2 3,462,173 - SMc03797 0.34 -0.3 3,462,355 + SMc03797 0.52 -0.3 3,462,442 + SMc03797 0.61 -0.3 3,462,442 + SMc03797 0.61 -0.0 3,462,572 + SMc03797 0.74 +0.2 3,462,573 - SMc03797 0.74 +0.2 3,462,599 - SMc03797 0.76 -0.2 3,462,599 - SMc03797 0.76 -0.9 3,462,599 - SMc03797 0.76 -0.0 3,462,647 - SMc03797 0.81 +0.9 3,462,694 + SMc03797 0.86 +0.2 3,462,695 - SMc03797 0.86 +0.3 3,462,784 + +0.6 3,462,800 - -0.6 3,462,964 + -1.3 3,462,964 + +1.1 3,462,965 - +1.9 3,463,110 + SMc03798 0.19 -1.0 3,463,111 - SMc03798 0.19 +0.3 3,463,183 - SMc03798 0.26 +0.7 3,463,285 + SMc03798 0.36 +0.4 3,463,286 - SMc03798 0.36 +1.0 3,463,353 + SMc03798 0.43 -0.4 3,463,354 - SMc03798 0.43 +0.9 3,463,440 + SMc03798 0.52 -1.3 3,463,441 - SMc03798 0.52 +0.1 3,463,441 - SMc03798 0.52 -0.5 3,463,503 + SMc03798 0.58 -2.0 3,463,504 - SMc03798 0.58 +0.5 3,463,504 - SMc03798 0.58 +0.7 3,463,624 - SMc03798 0.70 +0.4 3,463,681 + SMc03798 0.75 -0.1 3,463,765 + SMc03798 0.84 -0.2 3,463,912 - -0.7 3,464,005 + -0.6 3,464,036 + -0.5 3,464,181 + -0.5 3,464,182 - -0.2 3,464,506 + SMc03799 0.29 +1.3 3,464,600 + SMc03799 0.38 +1.0 3,464,600 + SMc03799 0.38 +0.0 3,464,601 - SMc03799 0.38 -0.6
Or see this region's nucleotide sequence