Experiment: Cobalt chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02825 and SMc02826 are separated by 87 nucleotides SMc02826 and SMc02827 are separated by 8 nucleotides SMc02827 and SMc02828 are separated by 236 nucleotides
SMc02825: SMc02825 - aminopeptidase, at 172,213 to 173,604
SMc02825
SMc02826: SMc02826 - transcriptional regulator, at 173,692 to 174,036
SMc02826
SMc02827: SMc02827 - hypothetical protein, at 174,045 to 174,899
SMc02827
SMc02828: SMc02828 - hydroxyacid dehydrogenase, at 175,136 to 176,095
SMc02828
Position (kb) 174
175 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 173.107 kb on + strand, within SMc02825 at 173.107 kb on + strand, within SMc02825 at 173.188 kb on + strand, within SMc02825 at 173.363 kb on - strand, within SMc02825 at 173.363 kb on - strand, within SMc02825 at 173.576 kb on - strand at 173.607 kb on - strand at 173.607 kb on - strand at 173.607 kb on - strand at 173.689 kb on - strand at 173.707 kb on - strand at 173.707 kb on - strand at 173.805 kb on - strand, within SMc02826 at 173.812 kb on + strand, within SMc02826 at 173.960 kb on + strand, within SMc02826 at 173.961 kb on - strand, within SMc02826 at 173.986 kb on + strand, within SMc02826 at 174.041 kb on - strand at 174.041 kb on - strand at 174.041 kb on - strand at 174.294 kb on + strand at 174.303 kb on + strand, within SMc02827 at 174.304 kb on - strand, within SMc02827 at 174.550 kb on - strand, within SMc02827 at 174.835 kb on + strand at 174.835 kb on + strand at 174.867 kb on + strand at 174.867 kb on + strand at 174.867 kb on + strand at 175.033 kb on + strand at 175.033 kb on + strand at 175.034 kb on - strand at 175.161 kb on - strand at 175.161 kb on - strand at 175.161 kb on - strand at 175.161 kb on - strand at 175.264 kb on - strand, within SMc02828 at 175.264 kb on - strand, within SMc02828 at 175.264 kb on - strand, within SMc02828 at 175.264 kb on - strand, within SMc02828 at 175.472 kb on - strand, within SMc02828 at 175.628 kb on - strand, within SMc02828
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM remove 173,107 + SMc02825 0.64 -0.3 173,107 + SMc02825 0.64 -0.0 173,188 + SMc02825 0.70 +0.5 173,363 - SMc02825 0.83 -0.9 173,363 - SMc02825 0.83 -0.1 173,576 - +0.1 173,607 - +0.6 173,607 - +0.2 173,607 - +0.0 173,689 - +1.6 173,707 - -0.0 173,707 - +0.5 173,805 - SMc02826 0.33 -1.2 173,812 + SMc02826 0.35 -0.5 173,960 + SMc02826 0.78 -0.5 173,961 - SMc02826 0.78 -0.4 173,986 + SMc02826 0.85 -1.9 174,041 - -0.5 174,041 - -1.5 174,041 - -1.0 174,294 + +0.0 174,303 + SMc02827 0.30 -0.8 174,304 - SMc02827 0.30 -2.0 174,550 - SMc02827 0.59 -0.7 174,835 + -1.9 174,835 + -2.1 174,867 + -2.1 174,867 + -4.4 174,867 + -1.1 175,033 + +0.2 175,033 + -0.4 175,034 - -0.8 175,161 - +0.3 175,161 - +0.5 175,161 - -0.2 175,161 - -0.1 175,264 - SMc02828 0.13 -1.2 175,264 - SMc02828 0.13 +0.2 175,264 - SMc02828 0.13 -0.6 175,264 - SMc02828 0.13 -0.4 175,472 - SMc02828 0.35 +0.6 175,628 - SMc02828 0.51 +0.5
Or see this region's nucleotide sequence