Experiment: Cobalt chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02270 and SMc02271 are separated by 81 nucleotides SMc02271 and SMc02272 are separated by 39 nucleotides
SMc02270: SMc02270 - capsular polysaccharide biosynthesis\export transmembrane protein, at 636,619 to 638,235
SMc02270
SMc02271: SMc02271 - ribitol type dehydrogenase, at 638,317 to 639,120
SMc02271
SMc02272: SMc02272 - acyl-transferase transferase, at 639,160 to 640,575
SMc02272
Position (kb) 638
639
640 Strain fitness (log2 ratio) -1
0
1
2
3 at 637.447 kb on + strand, within SMc02270 at 637.447 kb on + strand, within SMc02270 at 637.448 kb on - strand, within SMc02270 at 637.448 kb on - strand, within SMc02270 at 637.505 kb on - strand, within SMc02270 at 637.505 kb on - strand, within SMc02270 at 637.671 kb on - strand, within SMc02270 at 637.671 kb on - strand, within SMc02270 at 637.763 kb on + strand, within SMc02270 at 637.764 kb on - strand, within SMc02270 at 637.769 kb on + strand, within SMc02270 at 637.769 kb on + strand, within SMc02270 at 637.769 kb on + strand, within SMc02270 at 637.769 kb on + strand, within SMc02270 at 637.769 kb on + strand, within SMc02270 at 637.769 kb on + strand, within SMc02270 at 637.769 kb on + strand, within SMc02270 at 637.770 kb on - strand, within SMc02270 at 637.770 kb on - strand, within SMc02270 at 637.793 kb on + strand, within SMc02270 at 637.793 kb on + strand, within SMc02270 at 637.793 kb on + strand, within SMc02270 at 637.794 kb on - strand, within SMc02270 at 637.838 kb on + strand, within SMc02270 at 637.838 kb on + strand, within SMc02270 at 637.839 kb on - strand, within SMc02270 at 637.853 kb on + strand, within SMc02270 at 637.854 kb on - strand, within SMc02270 at 637.976 kb on + strand, within SMc02270 at 637.976 kb on + strand, within SMc02270 at 638.126 kb on + strand at 638.127 kb on - strand at 638.153 kb on + strand at 638.153 kb on + strand at 638.271 kb on + strand at 638.271 kb on + strand at 638.278 kb on + strand at 638.278 kb on + strand at 638.282 kb on - strand at 638.282 kb on - strand at 638.282 kb on - strand at 638.282 kb on - strand at 638.282 kb on - strand at 638.506 kb on + strand, within SMc02271 at 638.507 kb on - strand, within SMc02271 at 638.667 kb on + strand, within SMc02271 at 638.667 kb on + strand, within SMc02271 at 638.668 kb on - strand, within SMc02271 at 638.670 kb on - strand, within SMc02271 at 638.675 kb on + strand, within SMc02271 at 638.675 kb on + strand, within SMc02271 at 638.676 kb on - strand, within SMc02271 at 639.596 kb on + strand, within SMc02272 at 639.597 kb on - strand, within SMc02272 at 639.652 kb on + strand, within SMc02272 at 639.652 kb on + strand, within SMc02272 at 639.652 kb on + strand, within SMc02272 at 639.653 kb on - strand, within SMc02272 at 639.656 kb on + strand, within SMc02272 at 639.657 kb on - strand, within SMc02272 at 639.863 kb on + strand, within SMc02272 at 639.896 kb on + strand, within SMc02272 at 640.076 kb on + strand, within SMc02272 at 640.113 kb on - strand, within SMc02272
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM remove 637,447 + SMc02270 0.51 +2.1 637,447 + SMc02270 0.51 +2.0 637,448 - SMc02270 0.51 +1.0 637,448 - SMc02270 0.51 +2.8 637,505 - SMc02270 0.55 +1.6 637,505 - SMc02270 0.55 +2.0 637,671 - SMc02270 0.65 +2.0 637,671 - SMc02270 0.65 +1.4 637,763 + SMc02270 0.71 +2.0 637,764 - SMc02270 0.71 +1.4 637,769 + SMc02270 0.71 +2.2 637,769 + SMc02270 0.71 +1.8 637,769 + SMc02270 0.71 +2.2 637,769 + SMc02270 0.71 +1.3 637,769 + SMc02270 0.71 +1.8 637,769 + SMc02270 0.71 +1.7 637,769 + SMc02270 0.71 +1.1 637,770 - SMc02270 0.71 +1.9 637,770 - SMc02270 0.71 +1.7 637,793 + SMc02270 0.73 +1.5 637,793 + SMc02270 0.73 +1.7 637,793 + SMc02270 0.73 +2.1 637,794 - SMc02270 0.73 +1.8 637,838 + SMc02270 0.75 +1.9 637,838 + SMc02270 0.75 +1.6 637,839 - SMc02270 0.75 +2.4 637,853 + SMc02270 0.76 +1.8 637,854 - SMc02270 0.76 +1.8 637,976 + SMc02270 0.84 +1.9 637,976 + SMc02270 0.84 +1.9 638,126 + +2.0 638,127 - +1.9 638,153 + +0.6 638,153 + +1.6 638,271 + +1.9 638,271 + +1.8 638,278 + +1.5 638,278 + +1.4 638,282 - +1.4 638,282 - +1.0 638,282 - +2.0 638,282 - -0.3 638,282 - +0.9 638,506 + SMc02271 0.24 +1.6 638,507 - SMc02271 0.24 +1.3 638,667 + SMc02271 0.44 +1.7 638,667 + SMc02271 0.44 +0.7 638,668 - SMc02271 0.44 +1.5 638,670 - SMc02271 0.44 +2.1 638,675 + SMc02271 0.45 +1.7 638,675 + SMc02271 0.45 +1.4 638,676 - SMc02271 0.45 +1.4 639,596 + SMc02272 0.31 +1.8 639,597 - SMc02272 0.31 +2.6 639,652 + SMc02272 0.35 +2.5 639,652 + SMc02272 0.35 +2.4 639,652 + SMc02272 0.35 +2.6 639,653 - SMc02272 0.35 +2.4 639,656 + SMc02272 0.35 +2.0 639,657 - SMc02272 0.35 +2.5 639,863 + SMc02272 0.50 +2.1 639,896 + SMc02272 0.52 +1.9 640,076 + SMc02272 0.65 +2.0 640,113 - SMc02272 0.67 +2.5
Or see this region's nucleotide sequence