Strain Fitness in Sinorhizobium meliloti 1021 around SMc02271

Experiment: Cobalt chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02270 and SMc02271 are separated by 81 nucleotidesSMc02271 and SMc02272 are separated by 39 nucleotides SMc02270: SMc02270 - capsular polysaccharide biosynthesis\export transmembrane protein, at 636,619 to 638,235 SMc02270 SMc02271: SMc02271 - ribitol type dehydrogenase, at 638,317 to 639,120 SMc02271 SMc02272: SMc02272 - acyl-transferase transferase, at 639,160 to 640,575 SMc02272 Position (kb) 638 639 640Strain fitness (log2 ratio) -1 0 1 2 3at 637.447 kb on + strand, within SMc02270at 637.447 kb on + strand, within SMc02270at 637.448 kb on - strand, within SMc02270at 637.448 kb on - strand, within SMc02270at 637.505 kb on - strand, within SMc02270at 637.505 kb on - strand, within SMc02270at 637.671 kb on - strand, within SMc02270at 637.671 kb on - strand, within SMc02270at 637.763 kb on + strand, within SMc02270at 637.764 kb on - strand, within SMc02270at 637.769 kb on + strand, within SMc02270at 637.769 kb on + strand, within SMc02270at 637.769 kb on + strand, within SMc02270at 637.769 kb on + strand, within SMc02270at 637.769 kb on + strand, within SMc02270at 637.769 kb on + strand, within SMc02270at 637.769 kb on + strand, within SMc02270at 637.770 kb on - strand, within SMc02270at 637.770 kb on - strand, within SMc02270at 637.793 kb on + strand, within SMc02270at 637.793 kb on + strand, within SMc02270at 637.793 kb on + strand, within SMc02270at 637.794 kb on - strand, within SMc02270at 637.838 kb on + strand, within SMc02270at 637.838 kb on + strand, within SMc02270at 637.839 kb on - strand, within SMc02270at 637.853 kb on + strand, within SMc02270at 637.854 kb on - strand, within SMc02270at 637.976 kb on + strand, within SMc02270at 637.976 kb on + strand, within SMc02270at 638.126 kb on + strandat 638.127 kb on - strandat 638.153 kb on + strandat 638.153 kb on + strandat 638.271 kb on + strandat 638.271 kb on + strandat 638.278 kb on + strandat 638.278 kb on + strandat 638.282 kb on - strandat 638.282 kb on - strandat 638.282 kb on - strandat 638.282 kb on - strandat 638.282 kb on - strandat 638.506 kb on + strand, within SMc02271at 638.507 kb on - strand, within SMc02271at 638.667 kb on + strand, within SMc02271at 638.667 kb on + strand, within SMc02271at 638.668 kb on - strand, within SMc02271at 638.670 kb on - strand, within SMc02271at 638.675 kb on + strand, within SMc02271at 638.675 kb on + strand, within SMc02271at 638.676 kb on - strand, within SMc02271at 639.596 kb on + strand, within SMc02272at 639.597 kb on - strand, within SMc02272at 639.652 kb on + strand, within SMc02272at 639.652 kb on + strand, within SMc02272at 639.652 kb on + strand, within SMc02272at 639.653 kb on - strand, within SMc02272at 639.656 kb on + strand, within SMc02272at 639.657 kb on - strand, within SMc02272at 639.863 kb on + strand, within SMc02272at 639.896 kb on + strand, within SMc02272at 640.076 kb on + strand, within SMc02272at 640.113 kb on - strand, within SMc02272

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM
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637,447 + SMc02270 0.51 +2.1
637,447 + SMc02270 0.51 +2.0
637,448 - SMc02270 0.51 +1.0
637,448 - SMc02270 0.51 +2.8
637,505 - SMc02270 0.55 +1.6
637,505 - SMc02270 0.55 +2.0
637,671 - SMc02270 0.65 +2.0
637,671 - SMc02270 0.65 +1.4
637,763 + SMc02270 0.71 +2.0
637,764 - SMc02270 0.71 +1.4
637,769 + SMc02270 0.71 +2.2
637,769 + SMc02270 0.71 +1.8
637,769 + SMc02270 0.71 +2.2
637,769 + SMc02270 0.71 +1.3
637,769 + SMc02270 0.71 +1.8
637,769 + SMc02270 0.71 +1.7
637,769 + SMc02270 0.71 +1.1
637,770 - SMc02270 0.71 +1.9
637,770 - SMc02270 0.71 +1.7
637,793 + SMc02270 0.73 +1.5
637,793 + SMc02270 0.73 +1.7
637,793 + SMc02270 0.73 +2.1
637,794 - SMc02270 0.73 +1.8
637,838 + SMc02270 0.75 +1.9
637,838 + SMc02270 0.75 +1.6
637,839 - SMc02270 0.75 +2.4
637,853 + SMc02270 0.76 +1.8
637,854 - SMc02270 0.76 +1.8
637,976 + SMc02270 0.84 +1.9
637,976 + SMc02270 0.84 +1.9
638,126 + +2.0
638,127 - +1.9
638,153 + +0.6
638,153 + +1.6
638,271 + +1.9
638,271 + +1.8
638,278 + +1.5
638,278 + +1.4
638,282 - +1.4
638,282 - +1.0
638,282 - +2.0
638,282 - -0.3
638,282 - +0.9
638,506 + SMc02271 0.24 +1.6
638,507 - SMc02271 0.24 +1.3
638,667 + SMc02271 0.44 +1.7
638,667 + SMc02271 0.44 +0.7
638,668 - SMc02271 0.44 +1.5
638,670 - SMc02271 0.44 +2.1
638,675 + SMc02271 0.45 +1.7
638,675 + SMc02271 0.45 +1.4
638,676 - SMc02271 0.45 +1.4
639,596 + SMc02272 0.31 +1.8
639,597 - SMc02272 0.31 +2.6
639,652 + SMc02272 0.35 +2.5
639,652 + SMc02272 0.35 +2.4
639,652 + SMc02272 0.35 +2.6
639,653 - SMc02272 0.35 +2.4
639,656 + SMc02272 0.35 +2.0
639,657 - SMc02272 0.35 +2.5
639,863 + SMc02272 0.50 +2.1
639,896 + SMc02272 0.52 +1.9
640,076 + SMc02272 0.65 +2.0
640,113 - SMc02272 0.67 +2.5

Or see this region's nucleotide sequence