Strain Fitness in Sinorhizobium meliloti 1021 around SMc02089

Experiment: Cobalt chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02091 and SMc02090 overlap by 1 nucleotidesSMc02090 and SMc02089 overlap by 4 nucleotidesSMc02089 and SMc02088 are separated by 199 nucleotides SMc02091: SMc02091 - UDP-N-acetylglucosamine acyltransferase, at 1,618,234 to 1,619,046 SMc02091 SMc02090: SMc02090 - hypothetical protein, at 1,619,046 to 1,619,933 SMc02090 SMc02089: SMc02089 - lipid-A-disaccharide synthase, at 1,619,930 to 1,621,099 SMc02089 SMc02088: SMc02088 - hypothetical protein, at 1,621,299 to 1,621,583 SMc02088 Position (kb) 1619 1620 1621 1622Strain fitness (log2 ratio) -3 -2 -1 0 1at 1619.945 kb on + strandat 1621.244 kb on + strandat 1621.253 kb on + strandat 1621.290 kb on + strandat 1621.290 kb on + strandat 1621.315 kb on + strandat 1621.316 kb on - strandat 1621.432 kb on + strand, within SMc02088at 1621.433 kb on - strand, within SMc02088at 1621.433 kb on - strand, within SMc02088at 1621.534 kb on + strand, within SMc02088at 1621.534 kb on + strand, within SMc02088at 1621.534 kb on + strand, within SMc02088at 1621.534 kb on + strand, within SMc02088at 1621.535 kb on - strand, within SMc02088at 1621.535 kb on - strand, within SMc02088at 1621.565 kb on + strandat 1621.567 kb on + strandat 1621.567 kb on + strandat 1621.567 kb on + strandat 1621.567 kb on + strandat 1621.567 kb on + strandat 1621.568 kb on - strandat 1621.568 kb on - strandat 1621.568 kb on - strandat 1621.568 kb on - strandat 1621.568 kb on - strandat 1621.573 kb on + strandat 1621.574 kb on - strandat 1621.664 kb on + strandat 1621.665 kb on - strandat 1621.665 kb on - strandat 1621.665 kb on - strandat 1621.667 kb on + strandat 1621.667 kb on + strandat 1621.667 kb on + strandat 1621.668 kb on - strandat 1621.676 kb on + strandat 1621.677 kb on - strandat 1621.677 kb on - strandat 1621.741 kb on + strandat 1621.816 kb on + strandat 1621.957 kb on + strandat 1621.958 kb on - strandat 1621.960 kb on + strandat 1621.960 kb on + strandat 1621.961 kb on - strandat 1621.961 kb on - strandat 1621.961 kb on - strandat 1621.961 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM
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1,619,945 + -0.1
1,621,244 + -1.2
1,621,253 + +0.7
1,621,290 + -0.2
1,621,290 + -0.2
1,621,315 + +0.0
1,621,316 - -0.1
1,621,432 + SMc02088 0.47 -1.4
1,621,433 - SMc02088 0.47 -0.9
1,621,433 - SMc02088 0.47 -0.3
1,621,534 + SMc02088 0.82 -0.6
1,621,534 + SMc02088 0.82 -3.1
1,621,534 + SMc02088 0.82 +0.3
1,621,534 + SMc02088 0.82 +0.0
1,621,535 - SMc02088 0.83 -0.3
1,621,535 - SMc02088 0.83 -0.9
1,621,565 + +0.6
1,621,567 + +0.8
1,621,567 + +0.5
1,621,567 + -0.3
1,621,567 + +0.5
1,621,567 + -0.0
1,621,568 - +1.3
1,621,568 - -0.7
1,621,568 - +0.1
1,621,568 - -0.3
1,621,568 - -0.9
1,621,573 + +0.1
1,621,574 - -0.6
1,621,664 + -0.5
1,621,665 - -0.0
1,621,665 - +0.0
1,621,665 - -0.4
1,621,667 + -0.4
1,621,667 + -0.1
1,621,667 + +0.2
1,621,668 - +0.5
1,621,676 + -1.8
1,621,677 - -0.0
1,621,677 - -0.7
1,621,741 + +0.2
1,621,816 + -1.2
1,621,957 + -0.3
1,621,958 - -0.5
1,621,960 + +0.7
1,621,960 + -0.6
1,621,961 - +0.4
1,621,961 - +0.0
1,621,961 - +0.2
1,621,961 - +0.7

Or see this region's nucleotide sequence