Strain Fitness in Sinorhizobium meliloti 1021 around SMc02068

Experiment: Cobalt chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02070 and SMc02069 overlap by 8 nucleotidesSMc02069 and SMc02068 are separated by 64 nucleotidesSMc02068 and SMc02067 are separated by 94 nucleotidesSMc02067 and SMc02066 are separated by 73 nucleotides SMc02070: SMc02070 - hypothetical protein, at 1,648,380 to 1,649,246 SMc02070 SMc02069: SMc02069 - hypothetical protein, at 1,649,239 to 1,649,958 SMc02069 SMc02068: SMc02068 - ABC transporter ATP-binding protein, at 1,650,023 to 1,651,132 SMc02068 SMc02067: SMc02067 - twin arginine translocase A, at 1,651,227 to 1,651,433 SMc02067 SMc02066: SMc02066 - sec-independent translocase, at 1,651,507 to 1,652,154 SMc02066 Position (kb) 1650 1651 1652Strain fitness (log2 ratio) -2 -1 0 1at 1649.061 kb on + strand, within SMc02070at 1649.179 kb on - strandat 1649.278 kb on + strandat 1649.279 kb on - strandat 1649.279 kb on - strandat 1649.345 kb on + strand, within SMc02069at 1649.346 kb on - strand, within SMc02069at 1649.377 kb on + strand, within SMc02069at 1649.377 kb on + strand, within SMc02069at 1649.378 kb on - strand, within SMc02069at 1649.378 kb on - strand, within SMc02069at 1649.378 kb on - strand, within SMc02069at 1649.378 kb on - strand, within SMc02069at 1649.590 kb on + strand, within SMc02069at 1649.957 kb on - strandat 1649.984 kb on + strandat 1649.985 kb on - strandat 1649.988 kb on + strandat 1649.991 kb on - strandat 1650.041 kb on - strandat 1650.106 kb on + strandat 1650.106 kb on + strandat 1650.106 kb on + strandat 1650.106 kb on + strandat 1650.120 kb on - strandat 1650.120 kb on - strandat 1650.134 kb on - strand, within SMc02068at 1650.148 kb on - strand, within SMc02068at 1650.278 kb on + strand, within SMc02068at 1650.283 kb on - strand, within SMc02068at 1650.361 kb on + strand, within SMc02068at 1650.361 kb on + strand, within SMc02068at 1650.362 kb on - strand, within SMc02068at 1650.362 kb on - strand, within SMc02068at 1650.362 kb on - strand, within SMc02068at 1650.625 kb on - strand, within SMc02068at 1650.625 kb on - strand, within SMc02068at 1650.625 kb on - strand, within SMc02068at 1650.685 kb on + strand, within SMc02068at 1650.686 kb on - strand, within SMc02068at 1650.686 kb on - strand, within SMc02068at 1650.753 kb on - strand, within SMc02068at 1650.798 kb on + strand, within SMc02068at 1650.869 kb on + strand, within SMc02068at 1650.869 kb on + strand, within SMc02068at 1650.871 kb on + strand, within SMc02068at 1650.871 kb on + strand, within SMc02068at 1650.871 kb on + strand, within SMc02068at 1650.894 kb on + strand, within SMc02068at 1651.098 kb on + strandat 1651.130 kb on + strandat 1651.494 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM
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1,649,061 + SMc02070 0.79 -1.1
1,649,179 - +0.2
1,649,278 + +0.2
1,649,279 - -0.0
1,649,279 - +0.6
1,649,345 + SMc02069 0.15 -1.0
1,649,346 - SMc02069 0.15 +0.6
1,649,377 + SMc02069 0.19 -0.2
1,649,377 + SMc02069 0.19 +1.3
1,649,378 - SMc02069 0.19 -0.2
1,649,378 - SMc02069 0.19 +1.6
1,649,378 - SMc02069 0.19 -0.6
1,649,378 - SMc02069 0.19 +0.6
1,649,590 + SMc02069 0.49 -1.3
1,649,957 - -0.8
1,649,984 + -0.2
1,649,985 - -0.3
1,649,988 + -0.0
1,649,991 - -1.2
1,650,041 - -0.0
1,650,106 + +0.7
1,650,106 + -0.8
1,650,106 + -0.1
1,650,106 + +0.7
1,650,120 - -1.4
1,650,120 - -0.5
1,650,134 - SMc02068 0.10 -1.1
1,650,148 - SMc02068 0.11 -0.5
1,650,278 + SMc02068 0.23 -1.0
1,650,283 - SMc02068 0.23 -0.5
1,650,361 + SMc02068 0.30 +0.2
1,650,361 + SMc02068 0.30 -1.1
1,650,362 - SMc02068 0.31 -0.6
1,650,362 - SMc02068 0.31 +0.2
1,650,362 - SMc02068 0.31 -1.3
1,650,625 - SMc02068 0.54 -1.3
1,650,625 - SMc02068 0.54 -0.0
1,650,625 - SMc02068 0.54 -0.5
1,650,685 + SMc02068 0.60 -1.9
1,650,686 - SMc02068 0.60 -0.9
1,650,686 - SMc02068 0.60 -0.8
1,650,753 - SMc02068 0.66 -0.9
1,650,798 + SMc02068 0.70 -1.4
1,650,869 + SMc02068 0.76 -0.5
1,650,869 + SMc02068 0.76 -1.7
1,650,871 + SMc02068 0.76 -0.0
1,650,871 + SMc02068 0.76 -0.8
1,650,871 + SMc02068 0.76 -1.4
1,650,894 + SMc02068 0.78 -2.5
1,651,098 + -1.2
1,651,130 + -0.4
1,651,494 + +0.3

Or see this region's nucleotide sequence