Experiment: Cobalt chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02057 and SMc02056 overlap by 4 nucleotides SMc02056 and SMc02055 are separated by 21 nucleotides SMc02055 and SMc02054 are separated by 94 nucleotides
SMc02057: SMc02057 - preprotein translocase subunit SecD/SecF, at 1,660,365 to 1,662,941
SMc02057
SMc02056: SMc02056 - hypothetical protein, at 1,662,938 to 1,663,330
SMc02056
SMc02055: SMc02055 - phytoene synthase, at 1,663,352 to 1,664,194
SMc02055
SMc02054: SMc02054 - hypothetical protein, at 1,664,289 to 1,664,744
SMc02054
Position (kb)
1662
1663
1664 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1662.042 kb on - strand, within SMc02057 at 1662.047 kb on + strand, within SMc02057 at 1662.047 kb on + strand, within SMc02057 at 1662.330 kb on + strand, within SMc02057 at 1662.330 kb on + strand, within SMc02057 at 1662.330 kb on + strand, within SMc02057 at 1662.330 kb on + strand, within SMc02057 at 1662.330 kb on + strand, within SMc02057 at 1662.331 kb on - strand, within SMc02057 at 1662.331 kb on - strand, within SMc02057 at 1662.331 kb on - strand, within SMc02057 at 1662.331 kb on - strand, within SMc02057 at 1662.331 kb on - strand, within SMc02057 at 1662.432 kb on + strand, within SMc02057 at 1662.432 kb on + strand, within SMc02057 at 1662.607 kb on - strand, within SMc02057 at 1662.742 kb on - strand at 1662.742 kb on - strand at 1662.742 kb on - strand at 1662.790 kb on + strand at 1662.825 kb on + strand at 1662.825 kb on + strand at 1663.074 kb on + strand, within SMc02056 at 1663.075 kb on - strand, within SMc02056 at 1663.075 kb on - strand, within SMc02056 at 1663.075 kb on - strand, within SMc02056 at 1663.076 kb on + strand at 1663.077 kb on - strand, within SMc02056 at 1663.077 kb on - strand, within SMc02056 at 1663.274 kb on + strand, within SMc02056 at 1663.274 kb on + strand, within SMc02056 at 1663.274 kb on + strand, within SMc02056 at 1663.274 kb on + strand, within SMc02056 at 1663.275 kb on - strand, within SMc02056 at 1663.276 kb on + strand, within SMc02056 at 1663.276 kb on + strand, within SMc02056 at 1663.463 kb on + strand, within SMc02055 at 1663.679 kb on + strand, within SMc02055 at 1663.719 kb on - strand, within SMc02055 at 1663.719 kb on - strand, within SMc02055 at 1664.242 kb on - strand at 1664.242 kb on - strand at 1664.272 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM remove 1,662,042 - SMc02057 0.65 -0.2 1,662,047 + SMc02057 0.65 -0.3 1,662,047 + SMc02057 0.65 +0.6 1,662,330 + SMc02057 0.76 +0.2 1,662,330 + SMc02057 0.76 -0.8 1,662,330 + SMc02057 0.76 -0.2 1,662,330 + SMc02057 0.76 +0.8 1,662,330 + SMc02057 0.76 +0.3 1,662,331 - SMc02057 0.76 +0.8 1,662,331 - SMc02057 0.76 +1.4 1,662,331 - SMc02057 0.76 +0.7 1,662,331 - SMc02057 0.76 +0.6 1,662,331 - SMc02057 0.76 -1.8 1,662,432 + SMc02057 0.80 -0.5 1,662,432 + SMc02057 0.80 +0.0 1,662,607 - SMc02057 0.87 +2.2 1,662,742 - +1.6 1,662,742 - +0.7 1,662,742 - +0.3 1,662,790 + +0.1 1,662,825 + +0.6 1,662,825 + -0.5 1,663,074 + SMc02056 0.35 -1.5 1,663,075 - SMc02056 0.35 -0.1 1,663,075 - SMc02056 0.35 +1.8 1,663,075 - SMc02056 0.35 +1.8 1,663,076 + +1.9 1,663,077 - SMc02056 0.35 +0.5 1,663,077 - SMc02056 0.35 +2.6 1,663,274 + SMc02056 0.85 -1.2 1,663,274 + SMc02056 0.85 +1.2 1,663,274 + SMc02056 0.85 +0.6 1,663,274 + SMc02056 0.85 +0.4 1,663,275 - SMc02056 0.86 +2.1 1,663,276 + SMc02056 0.86 +0.7 1,663,276 + SMc02056 0.86 +0.6 1,663,463 + SMc02055 0.13 +3.0 1,663,679 + SMc02055 0.39 +1.2 1,663,719 - SMc02055 0.44 +0.6 1,663,719 - SMc02055 0.44 +1.6 1,664,242 - -1.2 1,664,242 - -0.7 1,664,272 - +0.2
Or see this region's nucleotide sequence