Strain Fitness in Sinorhizobium meliloti 1021 around SMc02056

Experiment: Cobalt chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02057 and SMc02056 overlap by 4 nucleotidesSMc02056 and SMc02055 are separated by 21 nucleotidesSMc02055 and SMc02054 are separated by 94 nucleotides SMc02057: SMc02057 - preprotein translocase subunit SecD/SecF, at 1,660,365 to 1,662,941 SMc02057 SMc02056: SMc02056 - hypothetical protein, at 1,662,938 to 1,663,330 SMc02056 SMc02055: SMc02055 - phytoene synthase, at 1,663,352 to 1,664,194 SMc02055 SMc02054: SMc02054 - hypothetical protein, at 1,664,289 to 1,664,744 SMc02054 Position (kb) 1662 1663 1664Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1662.042 kb on - strand, within SMc02057at 1662.047 kb on + strand, within SMc02057at 1662.047 kb on + strand, within SMc02057at 1662.330 kb on + strand, within SMc02057at 1662.330 kb on + strand, within SMc02057at 1662.330 kb on + strand, within SMc02057at 1662.330 kb on + strand, within SMc02057at 1662.330 kb on + strand, within SMc02057at 1662.331 kb on - strand, within SMc02057at 1662.331 kb on - strand, within SMc02057at 1662.331 kb on - strand, within SMc02057at 1662.331 kb on - strand, within SMc02057at 1662.331 kb on - strand, within SMc02057at 1662.432 kb on + strand, within SMc02057at 1662.432 kb on + strand, within SMc02057at 1662.607 kb on - strand, within SMc02057at 1662.742 kb on - strandat 1662.742 kb on - strandat 1662.742 kb on - strandat 1662.790 kb on + strandat 1662.825 kb on + strandat 1662.825 kb on + strandat 1663.074 kb on + strand, within SMc02056at 1663.075 kb on - strand, within SMc02056at 1663.075 kb on - strand, within SMc02056at 1663.075 kb on - strand, within SMc02056at 1663.076 kb on + strandat 1663.077 kb on - strand, within SMc02056at 1663.077 kb on - strand, within SMc02056at 1663.274 kb on + strand, within SMc02056at 1663.274 kb on + strand, within SMc02056at 1663.274 kb on + strand, within SMc02056at 1663.274 kb on + strand, within SMc02056at 1663.275 kb on - strand, within SMc02056at 1663.276 kb on + strand, within SMc02056at 1663.276 kb on + strand, within SMc02056at 1663.463 kb on + strand, within SMc02055at 1663.679 kb on + strand, within SMc02055at 1663.719 kb on - strand, within SMc02055at 1663.719 kb on - strand, within SMc02055at 1664.242 kb on - strandat 1664.242 kb on - strandat 1664.272 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM
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1,662,042 - SMc02057 0.65 -0.2
1,662,047 + SMc02057 0.65 -0.3
1,662,047 + SMc02057 0.65 +0.6
1,662,330 + SMc02057 0.76 +0.2
1,662,330 + SMc02057 0.76 -0.8
1,662,330 + SMc02057 0.76 -0.2
1,662,330 + SMc02057 0.76 +0.8
1,662,330 + SMc02057 0.76 +0.3
1,662,331 - SMc02057 0.76 +0.8
1,662,331 - SMc02057 0.76 +1.4
1,662,331 - SMc02057 0.76 +0.7
1,662,331 - SMc02057 0.76 +0.6
1,662,331 - SMc02057 0.76 -1.8
1,662,432 + SMc02057 0.80 -0.5
1,662,432 + SMc02057 0.80 +0.0
1,662,607 - SMc02057 0.87 +2.2
1,662,742 - +1.6
1,662,742 - +0.7
1,662,742 - +0.3
1,662,790 + +0.1
1,662,825 + +0.6
1,662,825 + -0.5
1,663,074 + SMc02056 0.35 -1.5
1,663,075 - SMc02056 0.35 -0.1
1,663,075 - SMc02056 0.35 +1.8
1,663,075 - SMc02056 0.35 +1.8
1,663,076 + +1.9
1,663,077 - SMc02056 0.35 +0.5
1,663,077 - SMc02056 0.35 +2.6
1,663,274 + SMc02056 0.85 -1.2
1,663,274 + SMc02056 0.85 +1.2
1,663,274 + SMc02056 0.85 +0.6
1,663,274 + SMc02056 0.85 +0.4
1,663,275 - SMc02056 0.86 +2.1
1,663,276 + SMc02056 0.86 +0.7
1,663,276 + SMc02056 0.86 +0.6
1,663,463 + SMc02055 0.13 +3.0
1,663,679 + SMc02055 0.39 +1.2
1,663,719 - SMc02055 0.44 +0.6
1,663,719 - SMc02055 0.44 +1.6
1,664,242 - -1.2
1,664,242 - -0.7
1,664,272 - +0.2

Or see this region's nucleotide sequence