Experiment: Cobalt chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01838 and SMc02046 are separated by 3 nucleotides SMc02046 and SMc01939 overlap by 4 nucleotides SMc01939 and SMc01940 are separated by 11 nucleotides SMc01940 and SMc01941 are separated by 12 nucleotides SMc01941 and SMc01942 are separated by 28 nucleotides
SMc01838: SMc01838 - urease accessory protein, at 2,662,466 to 2,663,116
SMc01838
SMc02046: SMc02046 - hypothetical protein, at 2,663,120 to 2,663,539
SMc02046
SMc01939: SMc01939 - urease subunit beta, at 2,663,536 to 2,663,841
SMc01939
SMc01940: SMc01940 - hypothetical protein, at 2,663,853 to 2,664,107
SMc01940
SMc01941: SMc01941 - urease subunit gamma, at 2,664,120 to 2,664,422
SMc01941
SMc01942: SMc01942 - urease accessory protein, at 2,664,451 to 2,665,284
SMc01942
Position (kb)
2663
2664 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2662.546 kb on - strand, within SMc01838 at 2662.546 kb on - strand, within SMc01838 at 2662.680 kb on + strand, within SMc01838 at 2662.681 kb on - strand, within SMc01838 at 2662.681 kb on - strand, within SMc01838 at 2662.681 kb on - strand, within SMc01838 at 2662.792 kb on + strand, within SMc01838 at 2662.793 kb on - strand, within SMc01838 at 2662.794 kb on + strand, within SMc01838 at 2662.883 kb on + strand, within SMc01838 at 2662.884 kb on - strand, within SMc01838 at 2662.884 kb on - strand, within SMc01838 at 2662.884 kb on - strand, within SMc01838 at 2663.291 kb on + strand, within SMc02046 at 2663.376 kb on + strand, within SMc02046 at 2663.376 kb on + strand, within SMc02046 at 2663.539 kb on + strand at 2663.539 kb on + strand at 2663.539 kb on + strand at 2663.540 kb on - strand at 2663.540 kb on - strand at 2663.643 kb on + strand, within SMc01939 at 2663.724 kb on - strand, within SMc01939 at 2663.824 kb on - strand at 2663.824 kb on - strand at 2664.486 kb on + strand at 2664.486 kb on + strand at 2664.486 kb on + strand at 2664.584 kb on + strand, within SMc01942 at 2664.585 kb on - strand, within SMc01942 at 2664.666 kb on - strand, within SMc01942
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM remove 2,662,546 - SMc01838 0.12 -0.6 2,662,546 - SMc01838 0.12 +0.8 2,662,680 + SMc01838 0.33 -1.6 2,662,681 - SMc01838 0.33 -0.3 2,662,681 - SMc01838 0.33 +0.2 2,662,681 - SMc01838 0.33 -0.2 2,662,792 + SMc01838 0.50 -0.1 2,662,793 - SMc01838 0.50 -0.8 2,662,794 + SMc01838 0.50 -0.9 2,662,883 + SMc01838 0.64 -2.2 2,662,884 - SMc01838 0.64 +0.4 2,662,884 - SMc01838 0.64 -0.2 2,662,884 - SMc01838 0.64 -1.2 2,663,291 + SMc02046 0.41 -0.5 2,663,376 + SMc02046 0.61 +1.1 2,663,376 + SMc02046 0.61 -1.0 2,663,539 + +0.4 2,663,539 + -0.2 2,663,539 + +1.9 2,663,540 - -0.9 2,663,540 - -0.6 2,663,643 + SMc01939 0.35 -0.1 2,663,724 - SMc01939 0.61 -1.6 2,663,824 - +0.1 2,663,824 - +0.4 2,664,486 + -0.2 2,664,486 + -1.2 2,664,486 + -1.3 2,664,584 + SMc01942 0.16 +0.3 2,664,585 - SMc01942 0.16 -1.0 2,664,666 - SMc01942 0.26 +0.4
Or see this region's nucleotide sequence